Variant report

Variant	rs2526326
Chromosome Location	chr17:34256728-34256729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2526324	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2526325	1.00[AMR][1000 genomes]
rs2702949	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2735473	1.00[AMR][1000 genomes]
rs2735478	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2951873	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9904202	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3380735	chr17:34246253-34271932	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1063100	chr17:34246253-34397598	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv833424	chr17:34246253-34419476	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1056950	chr17:34246253-34442620	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv1059795	chr17:34246253-34442620	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv1060457	chr17:34246253-34442620	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv543320	chr17:34246253-34442620	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv949160	chr17:34246253-34442620	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34244800-34256800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr17:34244800-34257000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr17:34245600-34257200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr17:34246000-34256800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr17:34246000-34256800	Weak transcription	Thymus	Thymus
6	chr17:34247200-34256800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr17:34247400-34257000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr17:34247600-34257000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr17:34248200-34256800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr17:34249800-34257000	Weak transcription	Fetal Muscle Leg	muscle
11	chr17:34250200-34256800	Weak transcription	A549	lung
12	chr17:34250200-34257000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr17:34250200-34257000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr17:34251400-34257000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr17:34251600-34256800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr17:34251600-34257000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr17:34251800-34256800	Weak transcription	Primary T cells from cord blood	blood
18	chr17:34251800-34256800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr17:34251800-34256800	Weak transcription	GM12878-XiMat	blood
20	chr17:34251800-34257000	Weak transcription	Primary B cells from cord blood	blood
21	chr17:34251800-34257000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr17:34251800-34257000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr17:34251800-34257000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr17:34252400-34257000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr17:34255200-34257000	Weak transcription	Liver	Liver
26	chr17:34255400-34257000	Weak transcription	Fetal Intestine Large	intestine
27	chr17:34255600-34257000	Weak transcription	Fetal Intestine Small	intestine
28	chr17:34256600-34256800	Enhancers	Fetal Thymus	thymus
29	chr17:34256600-34256800	Enhancers	K562	blood
30	chr17:34256600-34257000	Enhancers	Brain Germinal Matrix	brain
31	chr17:34256600-34257000	Enhancers	HMEC	breast
32	chr17:34256600-34257200	Enhancers	Primary T cells fromperipheralblood	blood
33	chr17:34256600-34257200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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