Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1195945	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1212393	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs166159	0.83[ASN][1000 genomes]
rs173756	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs173758	0.81[ASN][1000 genomes]
rs185211	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs252674	0.84[ASN][1000 genomes]
rs252675	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs252677	0.82[ASN][1000 genomes]
rs252679	0.88[ASN][1000 genomes]
rs252680	0.90[ASN][1000 genomes]
rs252681	0.87[ASN][1000 genomes]
rs252682	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs252683	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs252698	0.82[ASN][1000 genomes]
rs252699	0.82[ASN][1000 genomes]
rs412541	0.90[ASN][1000 genomes]
rs423882	0.85[ASN][1000 genomes]
rs443277	0.86[ASN][1000 genomes]
rs444702	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv823170	chr5:106326293-106673695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106664800-106667400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:106667000-106667800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:106667200-106667600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:106667200-106667800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr5:106667200-106668800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr5:106667200-106668800	Enhancers	HMEC	breast

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