Variant report

Variant	rs2532977
Chromosome Location	chr13:50950167-50950168
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50943769..50946768-chr13:50949049..50951856,2	MCF-7	breast:
2	chr13:50939370..50941845-chr13:50950043..50952232,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1410113	0.94[JPT][hapmap]
rs2532972	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs2532973	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2740541	0.81[ASN][1000 genomes]
rs2762059	0.82[JPT][hapmap]
rs2812221	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832609	chr13:50946577-51065968	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50939800-50953400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:50940200-50952600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr13:50941000-50951200	Weak transcription	HepG2	liver
4	chr13:50941600-50952400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr13:50941800-50950200	Weak transcription	Gastric	stomach
6	chr13:50943000-50953600	Weak transcription	Psoas Muscle	Psoas
7	chr13:50944600-50952600	Weak transcription	Fetal Heart	heart
8	chr13:50948400-50952400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:50949200-50950200	Enhancers	HSMM	muscle
10	chr13:50949400-50950400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr13:50949400-50950600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr13:50949600-50950400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr13:50949800-50950200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr13:50949800-50950200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr13:50949800-50950200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr13:50949800-50950200	Active TSS	HSMMtube	muscle
17	chr13:50949800-50950200	Enhancers	NH-A	brain
18	chr13:50949800-50950400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr13:50949800-50950400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr13:50949800-50950400	Enhancers	NHDF-Ad	bronchial
21	chr13:50950000-50950200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr13:50950000-50950200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr13:50950000-50950200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr13:50950000-50950200	Enhancers	Fetal Lung	lung
25	chr13:50950000-50950400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr13:50950000-50950400	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr13:50950000-50950400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr13:50950000-50950400	Enhancers	Brain Anterior Caudate	brain
29	chr13:50950000-50950400	Enhancers	NHLF	lung
30	chr13:50950000-50950400	Flanking Active TSS	Osteobl	bone
31	chr13:50950000-50950600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr13:50950000-50951000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr13:50950000-50954000	Enhancers	Fetal Thymus	thymus

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