Variant report

Variant	rs2533049
Chromosome Location	chr14:72320553-72320554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2533041	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2533042	0.89[ASN][1000 genomes]
rs2533043	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2533045	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2533046	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2533047	0.84[ASN][1000 genomes]
rs2533048	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2533050	0.83[ASN][1000 genomes]
rs2533052	0.83[ASN][1000 genomes]
rs2533054	0.88[ASN][1000 genomes]
rs2533060	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs887404	0.83[ASN][1000 genomes]
rs887405	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv565044	chr14:72317961-72336142	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72316600-72322600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:72319600-72322800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:72319600-72322800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr14:72319600-72323000	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links