Variant report

Variant	rs2534572
Chromosome Location	chr7:38370710-38370711
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:122)
CpG islands
(count:122)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:122 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:38370620-38370770	GM12864	blood:	n/a	n/a
2	CTCF	chr7:38370333-38370858	K562	blood:	n/a	chr7:38370807-38370815
3	CTCF	chr7:38370560-38370710	HCPEpiC	choroid plexus:	n/a	n/a
4	CTCF	chr7:38370391-38371079	K562	blood:	n/a	chr7:38370807-38370815
5	UBTF	chr7:38370555-38370821	K562	blood:	n/a	n/a
6	CTCF	chr7:38370600-38370750	RPTEC	kidney:	n/a	n/a
7	CTCFL	chr7:38370560-38370746	K562	blood:	n/a	chr7:38370663-38370672
8	CTCF	chr7:38370580-38370730	HCFaa	heart:	n/a	n/a
9	CTCF	chr7:38370580-38370730	HPAF	blood vessel:	n/a	n/a
10	JUND	chr7:38370335-38370780	K562	blood:	n/a	chr7:38370505-38370514
11	ELF1	chr7:38370500-38370823	GM12878	blood:	n/a	chr7:38370545-38370558
12	CTCF	chr7:38370580-38370730	HVMF	connective:	n/a	n/a
13	CTCF	chr7:38370588-38370758	HepG2	liver:	n/a	n/a
14	CTCF	chr7:38370607-38370770	MCF-7	breast:	n/a	n/a
15	CTCF	chr7:38370580-38370730	MCF-7	breast:	n/a	n/a
16	TAF1	chr7:38370488-38370856	H1-hESC	embryonic stem cell:	n/a	n/a
17	CTCF	chr7:38370600-38370750	Hela-S3	cervix:	n/a	n/a
18	CTCF	chr7:38370620-38370770	HFF-Myc	foreskin:	n/a	n/a
19	RAD21	chr7:38370424-38370883	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chr7:38370583-38370731	Spleen_OC	spleen:	n/a	n/a
21	CTCF	chr7:38370500-38370770	HFF	foreskin:	n/a	n/a
22	CTCF	chr7:38370580-38370730	AG04449	skin:	n/a	n/a
23	CTCF	chr7:38370610-38370767	MCF-7	breast:	n/a	n/a
24	CTCF	chr7:38370600-38370750	HMF	breast:	n/a	n/a
25	CTCF	chr7:38370375-38370853	H1-hESC	embryonic stem cell:	n/a	chr7:38370807-38370815
26	CTCF	chr7:38370396-38370823	K562	blood:	n/a	chr7:38370807-38370815
27	CTCF	chr7:38370640-38370790	GM12874	blood:	n/a	n/a
28	CTCF	chr7:38370600-38370750	HCT-116	colon:	n/a	n/a
29	CTCF	chr7:38370611-38370747	MCF-7	breast:	n/a	n/a
30	CTCF	chr7:38370600-38370750	BE2_C	brain:	n/a	n/a
31	CBX3	chr7:38370432-38370850	K562	blood:	n/a	n/a
32	CTCF	chr7:38370634-38370766	GM19239	blood:	n/a	n/a
33	CTCF	chr7:38370673-38370722	MCF-7	breast:	n/a	n/a
34	CTCF	chr7:38370600-38370750	NB4	blood:	n/a	n/a
35	CTCF	chr7:38370496-38370788	GM12878	blood:	n/a	n/a
36	CTCF	chr7:38370580-38370730	RPTEC	kidney:	n/a	n/a
37	CTCF	chr7:38370600-38370750	MCF-7	breast:	n/a	n/a
38	RAD21	chr7:38370548-38370726	K562	blood:	n/a	n/a
39	CTCF	chr7:38370560-38370710	GM12865	blood:	n/a	n/a
40	CTCF	chr7:38370560-38370710	GM12872	blood:	n/a	n/a
41	ELF1	chr7:38370338-38370832	K562	blood:	n/a	chr7:38370545-38370558
42	ZNF143	chr7:38370420-38370993	H1-hESC	embryonic stem cell:	n/a	n/a
43	CTCF	chr7:38370390-38370893	H1-hESC	embryonic stem cell:	n/a	chr7:38370807-38370815
44	ZNF143	chr7:38370445-38370847	K562	blood:	n/a	n/a
45	CTCF	chr7:38370607-38370762	Gliobla	brain:	n/a	n/a
46	CTCF	chr7:38370490-38370792	K562	blood:	n/a	n/a
47	CTCF	chr7:38370579-38370775	GM19238	blood:	n/a	n/a
48	CTCF	chr7:38370580-38370730	GM12866	blood:	n/a	n/a
49	CTCF	chr7:38370637-38370715	GM10266	blood:	n/a	n/a
50	CTCF	chr7:38370580-38370730	HepG2	liver:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:38370676-38370726	GM19239	blood:	n/a
2	chr7:38370676-38370726	RPTEC	kidney:	n/a
3	chr7:38370664-38370714	Hepatocyte	liver:	n/a
4	chr7:38370664-38370714	SK-N-SH_RA	brain:	n/a
5	chr7:38370676-38370726	AG04449	skin:	fetal
6	chr7:38370676-38370726	HRE	kidney:	n/a
7	chr7:38370676-38370726	HepG2	liver:	n/a
8	chr7:38370664-38370714	HEEpiC	esophagus:	n/a
9	chr7:38370664-38370714	U87	brain:	n/a
10	chr7:38370676-38370726	AG09309	skin:	n/a
11	chr7:38370664-38370714	Hela-S3	cervix:	n/a
12	chr7:38370676-38370726	CMK	blood:	n/a
13	chr7:38370676-38370726	Hela-S3	cervix:	n/a
14	chr7:38370676-38370726	IMR90	lung:	fetal
15	chr7:38370664-38370714	HCPEpiC	choroid plexus:	n/a
16	chr7:38370664-38370714	MCF-7	breast:	n/a
17	chr7:38370664-38370714	HUVEC	blood vessel:	n/a
18	chr7:38370676-38370726	HCPEpiC	choroid plexus:	n/a
19	chr7:38370664-38370714	PANC-1	pancreas:	n/a
20	chr7:38370664-38370714	HIPEpiC	eye:	n/a
21	chr7:38370676-38370726	NB4	blood:	n/a
22	chr7:38370676-38370726	HUVEC	blood vessel:	n/a
23	chr7:38370664-38370714	PFSK-1	brain:	n/a
24	chr7:38370676-38370726	PANC-1	pancreas:	n/a
25	chr7:38370676-38370726	U87	brain:	n/a
26	chr7:38370676-38370726	K562	blood:	n/a
27	chr7:38370664-38370714	MCF10A-Er-Src	breast:	n/a
28	chr7:38370676-38370726	NHBE	bronchial:	n/a
29	chr7:38370664-38370714	HCT-116	colon:	n/a
30	chr7:38370664-38370714	HPAEpiC	pulmonary alveolar:	n/a
31	chr7:38370676-38370726	GM06990	blood:	n/a
32	chr7:38370664-38370714	SKMC	muscle:	n/a
33	chr7:38370676-38370726	GM12892	blood:	n/a
34	chr7:38370664-38370714	HNPCEpiC	eye:	n/a
35	chr7:38370664-38370714	H1-hESC	embryonic stem cell:	embryo
36	chr7:38370676-38370726	HRCEpiC	kidney:	n/a
37	chr7:38370676-38370726	HCT-116	colon:	n/a
38	chr7:38370664-38370714	HAEpiC	amniotic membrane:	n/a
39	chr7:38370676-38370726	A549	lung:	n/a
40	chr7:38370676-38370726	HAEpiC	amniotic membrane:	n/a
41	chr7:38370676-38370726	SK-N-SH_RA	brain:	n/a
42	chr7:38370676-38370726	HCF	heart:	n/a
43	chr7:38370664-38370714	AG09319	gingival:	n/a
44	chr7:38370664-38370714	BE2_C	brain:	n/a
45	chr7:38370676-38370726	AoSMC	blood vessel:	n/a
46	chr7:38370664-38370714	HL-60	blood:	n/a
47	chr7:38370676-38370726	HNPCEpiC	eye:	n/a
48	chr7:38370676-38370726	ovcar-3	ovarian:	n/a
49	chr7:38370664-38370714	NHDF-neo	bronchial:	n/a
50	chr7:38370676-38370726	Hepatocyte	liver:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:38369534..38372460-chr7:38378778..38381886,3	K562	blood:
2	chr7:38350441..38353889-chr7:38368470..38373744,5	K562	blood:
3	chr7:38369664..38372472-chr7:38373590..38376789,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272908	TF binding region
TRGV8	TF binding region
ENSG00000272908	CpG island
TRGV8	CpG island
ENSG00000231916	Chromatin interaction
ENSG00000226212	Chromatin interaction
ENSG00000249978	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2191312	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2534575	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2735168	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2735174	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2735175	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2735179	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2735180	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34564515	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9639791	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9639792	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:69 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016355	chr7:38168232-38372719	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv2758112	chr7:38218703-38523455	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	esv2759524	chr7:38218703-38523455	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv427776	chr7:38218703-38523455	Genic enhancers Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv830964	chr7:38218708-38390518	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
6	nsv1030349	chr7:38227528-38372719	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv538818	chr7:38227528-38372719	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv1025974	chr7:38227528-38503472	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
9	nsv538819	chr7:38227528-38503472	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
10	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
11	nsv1027803	chr7:38257707-38410660	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
12	nsv538820	chr7:38257707-38410660	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
13	nsv1020990	chr7:38257707-38503472	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
14	nsv870213	chr7:38261012-38382508	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
15	nsv433062	chr7:38268395-38371334	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
16	nsv433054	chr7:38268395-38403367	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
17	nsv433049	chr7:38268395-38404971	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
18	esv1793647	chr7:38269292-38383243	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
19	esv1804547	chr7:38269292-38383243	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
20	esv1822202	chr7:38269292-38383243	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
21	esv1827702	chr7:38269292-38383243	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
22	esv1838074	chr7:38269292-38383243	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
23	esv1849699	chr7:38269292-38383243	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
24	nsv433072	chr7:38271544-38371334	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
25	esv2755783	chr7:38271544-38404971	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
26	esv1000823	chr7:38271623-38390120	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
27	esv33146	chr7:38288048-38406196	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
28	nsv820039	chr7:38289515-38411222	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
29	nsv824069	chr7:38290446-38370867	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
30	nsv824070	chr7:38290446-38378882	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
31	nsv824072	chr7:38293736-38371145	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
32	nsv824073	chr7:38293736-38380752	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
33	nsv824074	chr7:38293736-38404608	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
34	esv2757222	chr7:38294079-38418165	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
35	nsv1016366	chr7:38294089-38387431	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
36	nsv1016455	chr7:38294089-38402496	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
37	nsv433085	chr7:38294114-38371334	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
38	nsv433104	chr7:38294114-38384841	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
39	nsv433096	chr7:38294114-38386791	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
40	esv34699	chr7:38311060-38386791	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
41	nsv429724	chr7:38311098-38371334	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
42	nsv429726	chr7:38311098-38384841	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
43	nsv429718	chr7:38311098-38404971	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
44	nsv870301	chr7:38315298-38376501	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
45	nsv1019694	chr7:38317558-38387431	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
46	nsv818497	chr7:38318590-38380446	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
47	nsv519863	chr7:38318590-38417556	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
48	nsv1016931	chr7:38319339-38398047	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
49	nsv1019941	chr7:38319437-38472680	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
50	nsv1031936	chr7:38319437-38503472	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2534572	LOC648852	N/A	lymphoblastoid	RTeQTL
rs2534572	TRGV5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38366400-38370800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr7:38366800-38370800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:38366800-38371000	Enhancers	Primary T cells from cord blood	blood
4	chr7:38366800-38375200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr7:38367400-38370800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:38367400-38371800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:38367600-38371600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:38368400-38371000	Enhancers	Adipose Nuclei	Adipose
9	chr7:38368400-38371400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:38369000-38370800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:38369200-38375400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:38369600-38371000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr7:38369800-38373800	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:38370000-38371200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
15	chr7:38370000-38371600	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr7:38370000-38372600	Enhancers	K562	blood
17	chr7:38370200-38370800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:38370200-38370800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr7:38370200-38371000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr7:38370200-38371800	Flanking Active TSS	Fetal Thymus	thymus
21	chr7:38370200-38373800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr7:38370200-38373800	Enhancers	Dnd41	blood
23	chr7:38370200-38374000	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr7:38370400-38370800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr7:38370400-38370800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr7:38370400-38370800	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr7:38370400-38370800	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr7:38370400-38370800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr7:38370400-38370800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
30	chr7:38370400-38371200	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr7:38370400-38371600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
32	chr7:38370400-38371600	Enhancers	A549	lung
33	chr7:38370400-38372000	Enhancers	H1 Cell Line	embryonic stem cell
34	chr7:38370400-38372000	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr7:38370400-38372000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:38370400-38374800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr7:38370600-38370800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
38	chr7:38370600-38370800	Enhancers	Placenta	Placenta
39	chr7:38370600-38371200	Active TSS	Thymus	Thymus
40	chr7:38370600-38372000	Enhancers	Primary hematopoietic stem cells	blood

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