Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10774207	1.00[EUR][1000 genomes]
rs2430413	1.00[EUR][1000 genomes]
rs2534775	1.00[EUR][1000 genomes]
rs2534776	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2534777	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2534778	1.00[EUR][1000 genomes]
rs2534779	1.00[EUR][1000 genomes]
rs2534782	1.00[EUR][1000 genomes]
rs2534784	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2540122	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2540123	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2540129	1.00[EUR][1000 genomes]
rs57187655	1.00[ASN][1000 genomes]
rs58352382	1.00[ASN][1000 genomes]
rs60433110	1.00[ASN][1000 genomes]
rs7964101	1.00[EUR][1000 genomes]
rs7967186	1.00[ASN][1000 genomes]
rs7974877	1.00[EUR][1000 genomes]
rs7976361	1.00[EUR][1000 genomes]
rs7980172	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1050474	chr12:4226760-4389238	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv832317	chr12:4315298-4435615	Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4311400-4315600	Enhancers	H9 Cell Line	embryonic stem cell
2	chr12:4312400-4315800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:4313200-4315600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:4313800-4316000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:4313800-4319200	Weak transcription	GM12878-XiMat	blood
6	chr12:4314000-4318200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr12:4314200-4315600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr12:4314600-4315600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr12:4314600-4317800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr12:4314600-4317800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr12:4314600-4317800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr12:4314600-4323200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr12:4314800-4318000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr12:4315200-4315600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr12:4315200-4315600	Weak transcription	Primary B cells from cord blood	blood

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