Variant report

Variant	rs2536506
Chromosome Location	chr7:106718844-106718845
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr7:106718699-106720303	PBDE	blood:	n/a	chr7:106719817-106719827 chr7:106720073-106720080 chr7:106719819-106719826 chr7:106720073-106720080 chr7:106719819-106719826 chr7:106719812-106719833 chr7:106720073-106720080 chr7:106718961-106718982 chr7:106719819-106719826 chr7:106719430-106719439
2	YY1	chr7:106718793-106719397	SK-N-SH_RA	brain:	n/a	n/a
3	GATA2	chr7:106718702-106720226	SH-SY5Y	brain:	n/a	chr7:106719817-106719827 chr7:106720073-106720080 chr7:106719819-106719826 chr7:106720073-106720080 chr7:106719819-106719826 chr7:106719812-106719833 chr7:106720073-106720080 chr7:106718961-106718982 chr7:106719819-106719826 chr7:106719430-106719439
4	FOSL1	chr7:106718729-106719338	HCT-116	colon:	n/a	n/a
5	JUND	chr7:106718603-106720334	K562	blood:	n/a	n/a
6	TEAD4	chr7:106718570-106721499	K562	blood:	n/a	n/a
7	EP300	chr7:106718659-106720387	K562	blood:	n/a	chr7:106720298-106720312
8	TCF12	chr7:106718733-106719519	SK-N-SH	brain:	n/a	chr7:106719115-106719124 chr7:106719200-106719208
9	CEBPB	chr7:106718594-106719936	K562	blood:	n/a	chr7:106719442-106719459 chr7:106719125-106719138
10	FOS	chr7:106718839-106719234	MCF10A-Er-Src	breast:	n/a	chr7:106719017-106719028
11	UBTF	chr7:106718756-106719093	K562	blood:	n/a	n/a
12	CTCF	chr7:106718740-106718890	SK-N-SH_RA	brain:	n/a	n/a
13	POLR2A	chr7:106718679-106719462	HUVEC	blood vessel:	n/a	n/a
14	POLR2A	chr7:106718816-106718862	K562	blood:	n/a	n/a
15	ARID3A	chr7:106718750-106720391	K562	blood:	n/a	n/a
16	POLR2A	chr7:106718558-106720235	K562	blood:	n/a	n/a
17	FOS	chr7:106718811-106719234	MCF10A-Er-Src	breast:	n/a	chr7:106719017-106719028
18	RCOR1	chr7:106718674-106719227	K562	blood:	n/a	n/a
19	RCOR1	chr7:106718587-106719390	IMR90	lung:	n/a	n/a
20	FOSL2	chr7:106718724-106719411	SK-N-SH	brain:	n/a	n/a
21	CBX3	chr7:106718522-106720646	K562	blood:	n/a	n/a
22	CTCF	chr7:106718733-106718854	K562	blood:	n/a	n/a
23	CEBPB	chr7:106718436-106719555	K562	blood:	n/a	chr7:106719442-106719459 chr7:106719125-106719138
24	RAD21	chr7:106718703-106718858	K562	blood:	n/a	n/a
25	GATA1	chr7:106718493-106722997	K562	blood:	n/a	chr7:106719817-106719827 chr7:106722555-106722563 chr7:106720073-106720080 chr7:106719819-106719826 chr7:106720073-106720080 chr7:106719819-106719826 chr7:106719812-106719833 chr7:106720073-106720080 chr7:106718961-106718982 chr7:106721892-106721899 chr7:106719819-106719826 chr7:106720707-106720717 chr7:106719430-106719439
26	NFIC	chr7:106718523-106719537	SK-N-SH	brain:	n/a	n/a
27	FOSL2	chr7:106718842-106719164	A549	lung:	n/a	n/a
28	FOXA2	chr7:106718827-106719229	A549	lung:	n/a	n/a
29	NFIC	chr7:106718782-106719354	SK-N-SH	brain:	n/a	n/a
30	CTCF	chr7:106718651-106718979	K562	blood:	n/a	n/a
31	GATA2	chr7:106718750-106720489	HUVEC	blood vessel:	n/a	chr7:106719817-106719827 chr7:106720073-106720080 chr7:106719819-106719826 chr7:106720073-106720080 chr7:106719819-106719826 chr7:106719812-106719833 chr7:106720073-106720080 chr7:106718961-106718982 chr7:106719819-106719826 chr7:106719430-106719439
32	GATA3	chr7:106718697-106719582	SK-N-SH	brain:	n/a	chr7:106718961-106718982 chr7:106719430-106719439
33	MAX	chr7:106718739-106718889	K562	blood:	n/a	n/a
34	SMARCB1	chr7:106718816-106720132	K562	blood:	n/a	n/a
35	ZNF384	chr7:106718529-106718873	K562	blood:	n/a	n/a
36	NR2F2	chr7:106718494-106720492	K562	blood:	n/a	n/a
37	FOSL1	chr7:106718735-106719165	HCT-116	colon:	n/a	n/a
38	USF2	chr7:106718826-106718876	K562	blood:	n/a	n/a
39	CEBPB	chr7:106718611-106719111	HCT-116	colon:	n/a	n/a
40	POLR2A	chr7:106718611-106720469	HUVEC	blood vessel:	n/a	n/a
41	RCOR1	chr7:106718722-106718883	K562	blood:	n/a	n/a
42	FOS	chr7:106718726-106719259	HUVEC	blood vessel:	n/a	chr7:106719017-106719028
43	MAZ	chr7:106718749-106720343	K562	blood:	n/a	n/a
44	SMARCA4	chr7:106718838-106720136	K562	blood:	n/a	n/a
45	CTCF	chr7:106718760-106718910	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000243193	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv608072	chr7:106718347-106753248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106706400-106720000	Weak transcription	Spleen	Spleen
2	chr7:106706800-106719200	Weak transcription	Fetal Brain Male	brain
3	chr7:106710200-106720000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:106712200-106719000	Weak transcription	Brain Anterior Caudate	brain
5	chr7:106716000-106721400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:106716000-106721400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:106717600-106722600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr7:106717800-106721200	Enhancers	Adipose Nuclei	Adipose
9	chr7:106718000-106720800	Enhancers	Left Ventricle	heart
10	chr7:106718000-106730600	Weak transcription	Fetal Brain Female	brain
11	chr7:106718200-106720000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:106718400-106719400	Enhancers	Fetal Muscle Leg	muscle
13	chr7:106718400-106719800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr7:106718600-106719200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:106718600-106721000	Enhancers	Fetal Heart	heart
16	chr7:106718800-106719000	Enhancers	Gastric	stomach
17	chr7:106718800-106719400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:106718800-106719400	Enhancers	A549	lung
19	chr7:106718800-106720000	Flanking Active TSS	HUVEC	blood vessel
20	chr7:106718800-106720400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:106718800-106720600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr7:106718800-106720800	Enhancers	Lung	lung
23	chr7:106718800-106721200	Transcr. at gene 5' and 3'	K562	blood
24	chr7:106718800-106727800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links