Variant report

Variant	rs2536508
Chromosome Location	chr7:106722155-106722156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12705404	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1476878	0.84[JPT][hapmap]
rs1476879	0.84[JPT][hapmap]
rs2244846	0.84[JPT][hapmap]
rs2251838	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2536495	0.84[JPT][hapmap]
rs2536501	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2536502	0.92[ASN][1000 genomes]
rs2536504	0.92[ASN][1000 genomes]
rs2536509	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2707377	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7808028	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv608072	chr7:106718347-106753248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106717600-106722600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr7:106718000-106730600	Weak transcription	Fetal Brain Female	brain
3	chr7:106718800-106727800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:106719400-106723800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:106719400-106730400	Weak transcription	Fetal Brain Male	brain
6	chr7:106719400-106734200	Weak transcription	Brain Anterior Caudate	brain
7	chr7:106719800-106730600	Weak transcription	Brain Germinal Matrix	brain
8	chr7:106720200-106727000	Weak transcription	Pancreas	Pancrea
9	chr7:106720400-106723800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:106720800-106722200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:106720800-106730600	Weak transcription	Lung	lung
12	chr7:106720800-106730800	Weak transcription	Fetal Stomach	stomach
13	chr7:106721000-106722200	Weak transcription	Spleen	Spleen
14	chr7:106721000-106730200	Weak transcription	Fetal Heart	heart
15	chr7:106721200-106722600	Genic enhancers	K562	blood
16	chr7:106721800-106730600	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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