Variant report

Variant	rs2537867
Chromosome Location	chr4:55549124-55549125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2237019	0.92[EUR][1000 genomes]
rs2237021	0.80[EUR][1000 genomes]
rs2237023	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2282775	0.81[EUR][1000 genomes]
rs2537866	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2703461	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2703464	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2855770	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28729669	0.81[EUR][1000 genomes]
rs3020825	0.95[EUR][1000 genomes]
rs3020827	0.88[EUR][1000 genomes]
rs3111800	0.94[EUR][1000 genomes]
rs3134885	0.95[EUR][1000 genomes]
rs4864919	0.88[EUR][1000 genomes]
rs6810872	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv3367952	chr4:55437113-55724644	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1009516	chr4:55548449-55560839	Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55537600-55554000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:55539200-55549800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:55542600-55550600	Weak transcription	Lung	lung
4	chr4:55543400-55550800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:55543600-55551600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:55543800-55549400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:55545600-55549200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr4:55545600-55549200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr4:55545600-55549600	Weak transcription	Fetal Thymus	thymus
10	chr4:55545600-55575800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:55545800-55562000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr4:55546200-55549200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:55546800-55551000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:55546800-55558000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:55548000-55561600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:55548600-55549400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr4:55548800-55550000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:55549000-55555200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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