Variant report

Variant	rs2541014
Chromosome Location	chr2:67743078-67743079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1607905	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2541022	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	esv3335541	chr2:67577544-67773907	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67741400-67743800	Enhancers	Placenta	Placenta
2	chr2:67741400-67745200	Enhancers	NHDF-Ad	bronchial
3	chr2:67741400-67745200	Enhancers	NHLF	lung
4	chr2:67741600-67743200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:67741800-67743200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:67741800-67743800	Enhancers	NHEK	skin
7	chr2:67742000-67747000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr2:67742200-67743800	Weak transcription	Osteobl	bone
9	chr2:67742400-67743800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:67742400-67743800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:67742400-67744200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:67742600-67743200	Enhancers	Fetal Kidney	kidney
13	chr2:67742800-67743200	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr2:67742800-67744600	Weak transcription	Colon Smooth Muscle	Colon
15	chr2:67742800-67745400	Enhancers	Fetal Lung	lung
16	chr2:67743000-67743800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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