Variant report

Variant rs254226
Chromosome Location chr5:115885282-115885283
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115871000-115890400 Weak transcription Pancreas Pancrea
2 chr5:115873200-115889800 Weak transcription Rectal Smooth Muscle rectum
3 chr5:115876400-115886200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr5:115878200-115893200 Enhancers Fetal Adrenal Gland Adrenal Gland
5 chr5:115880000-115890400 Weak transcription Colonic Mucosa Colon
6 chr5:115880800-115900600 Weak transcription Fetal Kidney kidney
7 chr5:115881000-115886200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr5:115881000-115888200 Weak transcription ES-WA7 Cell Line embryonic stem cell
9 chr5:115881000-115889000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr5:115881600-115886200 Weak transcription Placenta Placenta
11 chr5:115881600-115888400 Enhancers Fetal Intestine Large intestine
12 chr5:115881800-115889000 Enhancers Brain Hippocampus Middle brain
13 chr5:115882200-115886400 Genic enhancers HUES6 Cell Line embryonic stem cell
14 chr5:115882200-115890200 Weak transcription Fetal Stomach stomach
15 chr5:115882400-115885400 Weak transcription HUES48 Cell Line embryonic stem cell
16 chr5:115882400-115886600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
17 chr5:115882400-115888600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr5:115882600-115885400 Strong transcription HUES64 Cell Line embryonic stem cell
19 chr5:115882600-115885400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
20 chr5:115882600-115885800 Weak transcription iPS-18 Cell Line embryonic stem cell
21 chr5:115882600-115886200 Weak transcription Psoas Muscle Psoas
22 chr5:115882600-115888200 Weak transcription Fetal Muscle Leg muscle
23 chr5:115882600-115890400 Weak transcription HepG2 liver
24 chr5:115882600-115890800 Weak transcription Aorta Aorta
25 chr5:115882600-115895400 Weak transcription Fetal Muscle Trunk muscle
26 chr5:115882800-115887200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
27 chr5:115883000-115887400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
28 chr5:115883600-115885400 Enhancers Brain Inferior Temporal Lobe brain
29 chr5:115883800-115890400 Weak transcription Gastric stomach
30 chr5:115884000-115885400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr5:115884000-115886600 Weak transcription Duodenum Mucosa Duodenum
32 chr5:115884000-115886600 Weak transcription Small Intestine intestine
33 chr5:115884000-115889000 Weak transcription Left Ventricle heart
34 chr5:115884000-115890000 Weak transcription Rectal Mucosa Donor 29 rectum
35 chr5:115884200-115885400 Genic enhancers ES-I3 Cell Line embryonic stem cell
36 chr5:115884200-115885400 Weak transcription iPS-15b Cell Line embryonic stem cell
37 chr5:115884200-115886200 Weak transcription H1 Cell Line embryonic stem cell
38 chr5:115884200-115886200 Weak transcription H9 Cell Line embryonic stem cell
39 chr5:115884200-115886600 Weak transcription Cortex derived primary cultured neurospheres brain
40 chr5:115884200-115888600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr5:115884200-115889000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
42 chr5:115884400-115889200 Weak transcription Rectal Mucosa Donor 31 rectum
43 chr5:115884600-115886200 Weak transcription Brain Angular Gyrus brain
44 chr5:115884800-115893200 Enhancers Brain Cingulate Gyrus brain
45 chr5:115885000-115885600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
46 chr5:115885000-115887200 Weak transcription Sigmoid Colon Sigmoid Colon
47 chr5:115885000-115888000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
48 chr5:115885000-115889000 Enhancers Brain Anterior Caudate brain
49 chr5:115885200-115886200 Weak transcription iPS-20b Cell Line embryonic stem cell
50 chr5:115885200-115886200 Weak transcription Brain Substantia Nigra brain

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