Variant report
Variant | rs254226 |
---|---|
Chromosome Location | chr5:115885282-115885283 |
allele | C/T |
Outlinks | Ensembl   UCSC |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:115871000-115890400 | Weak transcription | Pancreas | Pancrea |
2 | chr5:115873200-115889800 | Weak transcription | Rectal Smooth Muscle | rectum |
3 | chr5:115876400-115886200 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
4 | chr5:115878200-115893200 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
5 | chr5:115880000-115890400 | Weak transcription | Colonic Mucosa | Colon |
6 | chr5:115880800-115900600 | Weak transcription | Fetal Kidney | kidney |
7 | chr5:115881000-115886200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
8 | chr5:115881000-115888200 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
9 | chr5:115881000-115889000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
10 | chr5:115881600-115886200 | Weak transcription | Placenta | Placenta |
11 | chr5:115881600-115888400 | Enhancers | Fetal Intestine Large | intestine |
12 | chr5:115881800-115889000 | Enhancers | Brain Hippocampus Middle | brain |
13 | chr5:115882200-115886400 | Genic enhancers | HUES6 Cell Line | embryonic stem cell |
14 | chr5:115882200-115890200 | Weak transcription | Fetal Stomach | stomach |
15 | chr5:115882400-115885400 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
16 | chr5:115882400-115886600 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
17 | chr5:115882400-115888600 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
18 | chr5:115882600-115885400 | Strong transcription | HUES64 Cell Line | embryonic stem cell |
19 | chr5:115882600-115885400 | Strong transcription | ES-UCSF4 Cell Line | embryonic stem cell |
20 | chr5:115882600-115885800 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
21 | chr5:115882600-115886200 | Weak transcription | Psoas Muscle | Psoas |
22 | chr5:115882600-115888200 | Weak transcription | Fetal Muscle Leg | muscle |
23 | chr5:115882600-115890400 | Weak transcription | HepG2 | liver |
24 | chr5:115882600-115890800 | Weak transcription | Aorta | Aorta |
25 | chr5:115882600-115895400 | Weak transcription | Fetal Muscle Trunk | muscle |
26 | chr5:115882800-115887200 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
27 | chr5:115883000-115887400 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
28 | chr5:115883600-115885400 | Enhancers | Brain Inferior Temporal Lobe | brain |
29 | chr5:115883800-115890400 | Weak transcription | Gastric | stomach |
30 | chr5:115884000-115885400 | Strong transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
31 | chr5:115884000-115886600 | Weak transcription | Duodenum Mucosa | Duodenum |
32 | chr5:115884000-115886600 | Weak transcription | Small Intestine | intestine |
33 | chr5:115884000-115889000 | Weak transcription | Left Ventricle | heart |
34 | chr5:115884000-115890000 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
35 | chr5:115884200-115885400 | Genic enhancers | ES-I3 Cell Line | embryonic stem cell |
36 | chr5:115884200-115885400 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
37 | chr5:115884200-115886200 | Weak transcription | H1 Cell Line | embryonic stem cell |
38 | chr5:115884200-115886200 | Weak transcription | H9 Cell Line | embryonic stem cell |
39 | chr5:115884200-115886600 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
40 | chr5:115884200-115888600 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
41 | chr5:115884200-115889000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
42 | chr5:115884400-115889200 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
43 | chr5:115884600-115886200 | Weak transcription | Brain Angular Gyrus | brain |
44 | chr5:115884800-115893200 | Enhancers | Brain Cingulate Gyrus | brain |
45 | chr5:115885000-115885600 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
46 | chr5:115885000-115887200 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
47 | chr5:115885000-115888000 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
48 | chr5:115885000-115889000 | Enhancers | Brain Anterior Caudate | brain |
49 | chr5:115885200-115886200 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
50 | chr5:115885200-115886200 | Weak transcription | Brain Substantia Nigra | brain |