Variant report

Variant	rs2544140
Chromosome Location	chr15:57626664-57626665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2544138	0.96[AFR][1000 genomes]
rs935324	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv569579	chr15:57622600-57775806	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1045656	chr15:57622685-57748473	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv542395	chr15:57622685-57748473	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57613000-57626800	Weak transcription	Right Atrium	heart
2	chr15:57613000-57635400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:57618600-57632000	Weak transcription	Spleen	Spleen
4	chr15:57622800-57629800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:57624400-57628200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:57624600-57628200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:57624600-57628400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:57625200-57627400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:57625200-57632000	Enhancers	HUVEC	blood vessel
10	chr15:57625400-57627200	Enhancers	NH-A	brain
11	chr15:57625600-57626800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:57625600-57626800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:57625600-57626800	Enhancers	NHEK	skin
14	chr15:57625600-57627000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:57625800-57626800	Enhancers	HMEC	breast
16	chr15:57625800-57627000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr15:57625800-57627000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:57625800-57627000	Enhancers	HSMM	muscle
19	chr15:57625800-57627200	Enhancers	A549	lung
20	chr15:57625800-57628200	Enhancers	K562	blood
21	chr15:57626000-57628200	Enhancers	Fetal Heart	heart
22	chr15:57626200-57628400	Enhancers	Fetal Intestine Small	intestine
23	chr15:57626400-57626800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:57626400-57627000	Enhancers	Placenta Amnion	Placenta Amnion
25	chr15:57626400-57627200	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr15:57626400-57627200	Enhancers	Duodenum Mucosa	Duodenum
27	chr15:57626400-57627400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr15:57626400-57627400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr15:57626400-57627600	Enhancers	Stomach Mucosa	stomach
30	chr15:57626400-57628200	Enhancers	Fetal Stomach	stomach
31	chr15:57626400-57628200	Enhancers	Lung	lung
32	chr15:57626400-57628400	Enhancers	Fetal Intestine Large	intestine
33	chr15:57626600-57626800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:57626600-57626800	Flanking Bivalent TSS/Enh	HepG2	liver
35	chr15:57626600-57627000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:57626600-57627200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr15:57626600-57627400	Enhancers	HSMMtube	muscle
38	chr15:57626600-57627600	Enhancers	Esophagus	oesophagus
39	chr15:57626600-57627800	Enhancers	Fetal Lung	lung
40	chr15:57626600-57628200	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr15:57626600-57632600	Enhancers	Fetal Muscle Trunk	muscle
42	chr15:57626600-57633400	Enhancers	Fetal Muscle Leg	muscle

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