Variant report

Variant	rs2545155
Chromosome Location	chr5:112184490-112184491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:112026946..112027486-chr5:112183995..112184672,2	MCF-7	breast:
2	chr5:112182395..112185166-chr5:112196158..112198172,2	K562	blood:
3	chr5:112176263..112181367-chr5:112181688..112184725,5	K562	blood:
4	chr5:112181480..112186029-chr5:112194933..112197058,4	MCF-7	breast:
5	chr5:111990789..111993618-chr5:112182329..112184626,2	K562	blood:
6	chr5:112183666..112186404-chr5:112196672..112198293,2	K562	blood:

Variant related genes	Relation type
ENSG00000272869	Chromatin interaction
ENSG00000153037	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1093611	0.80[ASN][1000 genomes]
rs153549	0.83[ASN][1000 genomes]
rs153551	0.83[ASN][1000 genomes]
rs153552	0.81[ASN][1000 genomes]
rs1914	0.84[AMR][1000 genomes]
rs1966476	0.85[ASN][1000 genomes]
rs2229992	0.82[ASN][1000 genomes]
rs2251913	0.83[AMR][1000 genomes]
rs2253987	0.85[AMR][1000 genomes]
rs2431241	0.84[AMR][1000 genomes]
rs2431512	0.83[AMR][1000 genomes]
rs2464803	0.84[AMR][1000 genomes]
rs2545156	0.82[ASN][1000 genomes]
rs2545158	0.84[AMR][1000 genomes]
rs2545170	0.86[ASN][1000 genomes]
rs2546106	0.84[AMR][1000 genomes]
rs2546107	0.84[AMR][1000 genomes]
rs2546108	0.84[AMR][1000 genomes]
rs2546112	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2707765	0.81[AMR][1000 genomes]
rs3317	0.87[ASN][1000 genomes]
rs351767	0.82[ASN][1000 genomes]
rs351768	0.82[ASN][1000 genomes]
rs351770	0.84[ASN][1000 genomes]
rs351772	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs368575	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs373059	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs374613	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs382427	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs390092	0.84[AMR][1000 genomes]
rs395858	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs410701	0.86[ASN][1000 genomes]
rs41116	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs419155	0.87[ASN][1000 genomes]
rs448162	0.92[ASN][1000 genomes]
rs448475	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs448613	0.87[ASN][1000 genomes]
rs454968	0.90[ASN][1000 genomes]
rs456531	0.84[ASN][1000 genomes]
rs459102	0.80[ASN][1000 genomes]
rs460137	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs495794	0.82[ASN][1000 genomes]
rs505382	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs511906	0.83[AMR][1000 genomes]
rs514763	0.82[ASN][1000 genomes]
rs518013	0.82[AMR][1000 genomes]
rs548710	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs566419	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67293732	0.84[ASN][1000 genomes]
rs712670	0.87[ASN][1000 genomes]
rs7213	0.82[ASN][1000 genomes]
rs818428	0.84[ASN][1000 genomes]
rs818429	0.80[ASN][1000 genomes]
rs818430	0.84[ASN][1000 genomes]
rs818797	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032464	chr5:112076061-112192380	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
2	nsv537862	chr5:112076061-112192380	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	esv33290	chr5:112110808-112238295	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1029271	chr5:112113308-112325943	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv1034239	chr5:112161239-112194693	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv529536	chr5:112174106-112269758	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112175400-112187600	Weak transcription	NHLF	lung
2	chr5:112176800-112185800	Weak transcription	Primary B cells from cord blood	blood
3	chr5:112179400-112185400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:112183800-112184600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:112183800-112184600	Enhancers	Primary B cells from peripheral blood	blood
6	chr5:112183800-112184600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr5:112184400-112184600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

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