Variant report

Variant	rs2546101
Chromosome Location	chr5:94716810-94716811
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1469394	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1469395	0.85[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17084624	0.89[JPT][hapmap]
rs2468497	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2546096	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2548650	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2548655	0.85[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2548656	0.88[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2560263	0.82[ASN][1000 genomes]
rs2560264	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2560265	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2560266	0.88[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2731822	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2731823	0.85[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2731824	0.88[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3110224	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94715600-94717000	Enhancers	Fetal Thymus	thymus
2	chr5:94716600-94717400	Enhancers	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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