Variant report

Variant	rs2546797
Chromosome Location	chr5:128371670-128371671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs12054790	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12055160	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs168920	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs183760	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs194459	0.83[AMR][1000 genomes]
rs194461	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2252307	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2262285	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2262286	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2289213	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2289215	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2289216	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2289217	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2431704	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2431708	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2438183	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2438187	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2438188	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2538007	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2538008	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2538009	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2538010	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2538011	0.81[EUR][1000 genomes]
rs2538012	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2538013	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2538014	0.81[EUR][1000 genomes]
rs2538015	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2538017	0.81[EUR][1000 genomes]
rs2538018	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2538019	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2538020	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2538021	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2546791	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2546792	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2546793	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2546794	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2546796	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2577553	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2577557	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2577558	0.83[AMR][1000 genomes]
rs2577559	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs257920	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs257922	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs257928	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs257931	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs257932	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs257933	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs257934	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs257935	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs257937	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs257938	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs257939	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs40977	0.83[AMR][1000 genomes]
rs42356	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56041041	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66854378	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67093030	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs67340123	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67904325	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67976726	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6867407	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs727646	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs727647	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72799397	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830485	chr5:128298622-128480492	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	nsv882841	chr5:128301971-128400356	Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882842	chr5:128301971-128552706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
6	nsv882844	chr5:128325025-128377555	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv882845	chr5:128325025-128404226	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv599701	chr5:128328165-128773052	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
9	nsv1015525	chr5:128335133-128443859	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
10	nsv882846	chr5:128345803-128428962	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv882847	chr5:128368505-128665719	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128329000-128372000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr5:128357400-128374000	Weak transcription	Left Ventricle	heart
3	chr5:128367000-128379400	Weak transcription	Fetal Heart	heart
4	chr5:128371600-128373600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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