Variant report

Variant rs2550238
Chromosome Location chr3:195454782-195454783
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:195439000-195465200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
2 chr3:195442200-195475000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr3:195442400-195457800 Weak transcription Duodenum Smooth Muscle Duodenum
4 chr3:195442400-195468200 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr3:195442600-195474200 Weak transcription Primary T helper naive cells fromperipheralblood blood
6 chr3:195442800-195456400 Weak transcription Brain Anterior Caudate brain
7 chr3:195442800-195456600 Weak transcription Brain Angular Gyrus brain
8 chr3:195442800-195461600 Weak transcription Primary T helper cells fromperipheralblood blood
9 chr3:195442800-195475000 Weak transcription Brain Substantia Nigra brain
10 chr3:195443000-195456400 Weak transcription Brain Hippocampus Middle brain
11 chr3:195443000-195456400 Weak transcription Rectal Smooth Muscle rectum
12 chr3:195443000-195456600 Weak transcription Brain Cingulate Gyrus brain
13 chr3:195443000-195456600 Weak transcription Lung lung
14 chr3:195443000-195456600 Weak transcription Ovary ovary
15 chr3:195443000-195459800 Weak transcription Colon Smooth Muscle Colon
16 chr3:195443000-195468000 Weak transcription Primary T helper cells PMA-I stimulated --
17 chr3:195443200-195456400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr3:195445600-195456400 Weak transcription Brain Inferior Temporal Lobe brain
19 chr3:195445800-195456400 Weak transcription Aorta Aorta
20 chr3:195448000-195456400 Weak transcription Primary T cells from cord blood blood
21 chr3:195448000-195457800 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr3:195448200-195459800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
23 chr3:195448200-195460800 Weak transcription Pancreatic Islets Pancreatic Islet
24 chr3:195448200-195483800 Weak transcription Placenta Amnion Placenta Amnion
25 chr3:195449000-195456600 Weak transcription Breast Myoepithelial Primary Cells Breast
26 chr3:195449400-195458000 Weak transcription Placenta Placenta
27 chr3:195450000-195457800 Weak transcription Pancreas Pancrea
28 chr3:195450400-195458400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr3:195453200-195454800 Enhancers Gastric stomach
30 chr3:195453200-195455000 Genic enhancers Fetal Intestine Small intestine
31 chr3:195453200-195455200 Enhancers Fetal Brain Male brain
32 chr3:195453800-195456400 Enhancers Fetal Intestine Large intestine
33 chr3:195454000-195454800 Enhancers Fetal Muscle Trunk muscle
34 chr3:195454200-195454800 Enhancers Primary B cells from peripheral blood blood
35 chr3:195454200-195454800 Flanking Active TSS Colonic Mucosa Colon
36 chr3:195454200-195454800 Active TSS Spleen Spleen
37 chr3:195454200-195455000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
38 chr3:195454200-195455000 Flanking Active TSS Duodenum Mucosa Duodenum
39 chr3:195454200-195455000 Active TSS Esophagus oesophagus
40 chr3:195454200-195455000 Enhancers Fetal Brain Female brain
41 chr3:195454200-195455000 Enhancers Fetal Muscle Leg muscle
42 chr3:195454200-195455200 Enhancers Cortex derived primary cultured neurospheres brain
43 chr3:195454200-195455400 Enhancers Rectal Mucosa Donor 31 rectum
44 chr3:195454400-195454800 Enhancers Fetal Thymus thymus
45 chr3:195454400-195455000 Flanking Active TSS Rectal Mucosa Donor 29 rectum
46 chr3:195454400-195455000 Enhancers Small Intestine intestine
47 chr3:195454400-195456200 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr3:195454400-195459800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr3:195454600-195454800 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr3:195454600-195454800 Bivalent Enhancer H9 Derived Neuron Cultured Cells ES cell derived

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