Variant report

Variant	rs2551429
Chromosome Location	chr15:34295349-34295350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2702304	1.00[MEX][hapmap]
rs489945	1.00[TSI][hapmap]
rs519152	1.00[TSI][hapmap]
rs520032	1.00[TSI][hapmap]
rs647721	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv903985	chr15:34279319-34370487	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34265200-34299600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:34265400-34311800	Weak transcription	Liver	Liver
3	chr15:34274400-34311000	Weak transcription	Primary B cells from cord blood	blood
4	chr15:34277800-34303200	Weak transcription	Gastric	stomach
5	chr15:34278200-34310000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:34278400-34299600	Weak transcription	HSMM	muscle
7	chr15:34280800-34296200	Weak transcription	Pancreas	Pancrea
8	chr15:34281000-34306800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:34283000-34306000	Weak transcription	Ovary	ovary
10	chr15:34284200-34296800	Weak transcription	Brain Angular Gyrus	brain
11	chr15:34289400-34303800	Weak transcription	Psoas Muscle	Psoas
12	chr15:34289800-34299200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr15:34292000-34315000	Weak transcription	Aorta	Aorta
14	chr15:34293400-34295400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr15:34293800-34296600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:34294400-34295600	Weak transcription	NHEK	skin
17	chr15:34294800-34315600	Weak transcription	Left Ventricle	heart
18	chr15:34295200-34296400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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