Variant report

Variant	rs2552407
Chromosome Location	chr14:80076346-80076347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12433645	0.83[EUR][1000 genomes]
rs1364603	0.83[EUR][1000 genomes]
rs170248	0.94[EUR][1000 genomes]
rs170255	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs172712	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs178348	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17836224	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17836226	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1834242	0.80[EUR][1000 genomes]
rs188780	0.92[EUR][1000 genomes]
rs1991158	0.80[EUR][1000 genomes]
rs2008380	0.80[EUR][1000 genomes]
rs221416	0.85[EUR][1000 genomes]
rs221418	0.85[EUR][1000 genomes]
rs221423	0.90[EUR][1000 genomes]
rs221427	0.94[EUR][1000 genomes]
rs221428	0.87[EUR][1000 genomes]
rs221429	0.96[EUR][1000 genomes]
rs221430	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs221431	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs221432	0.92[EUR][1000 genomes]
rs221434	0.92[EUR][1000 genomes]
rs221435	0.95[EUR][1000 genomes]
rs221518	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2543570	0.92[EUR][1000 genomes]
rs2543572	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2543574	0.94[EUR][1000 genomes]
rs2543576	0.96[EUR][1000 genomes]
rs2543577	0.96[EUR][1000 genomes]
rs2543579	0.96[EUR][1000 genomes]
rs2543580	0.96[EUR][1000 genomes]
rs2543581	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2543582	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2552416	0.91[EUR][1000 genomes]
rs2552419	0.96[EUR][1000 genomes]
rs7140480	0.80[EUR][1000 genomes]
rs8009763	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8013736	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80073600-80080000	Weak transcription	Brain Substantia Nigra	brain

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