Variant report

Variant	rs2553217
Chromosome Location	chr15:54884753-54884754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10220855	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11632253	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11632366	0.85[EUR][1000 genomes]
rs12592900	0.85[EUR][1000 genomes]
rs12592914	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12708436	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1818704	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1818711	0.82[EUR][1000 genomes]
rs1850994	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1851000	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1851010	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1972137	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2414327	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2460605	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2460606	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2460608	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2553216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2553220	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2553221	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2553225	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2681958	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2681959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2681964	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2681965	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2681966	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2911846	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2911847	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2947001	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2947003	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35710610	0.87[ASN][1000 genomes]
rs3848141	0.82[EUR][1000 genomes]
rs6493694	0.84[EUR][1000 genomes]
rs6493695	0.85[EUR][1000 genomes]
rs7174529	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72740053	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9284299	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv904236	chr15:54820897-54912439	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1039548	chr15:54856965-54914519	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv569508	chr15:54876212-54904782	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv526413	chr15:54876423-54904782	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54880800-54887600	Weak transcription	Fetal Heart	heart

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