Variant report

Variant	rs2553366
Chromosome Location	chr4:124605540-124605541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11726784	0.87[EUR][1000 genomes]
rs11735849	0.89[EUR][1000 genomes]
rs12500929	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13113892	0.87[EUR][1000 genomes]
rs1364875	0.84[EUR][1000 genomes]
rs1425414	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2042628	0.81[EUR][1000 genomes]
rs2553356	0.85[EUR][1000 genomes]
rs2553369	0.85[EUR][1000 genomes]
rs2553370	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2589838	0.89[EUR][1000 genomes]
rs2589845	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2589854	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2589856	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34182893	0.82[EUR][1000 genomes]
rs35748127	0.89[EUR][1000 genomes]
rs62319743	0.84[EUR][1000 genomes]
rs6838030	0.81[AMR][1000 genomes]
rs7657498	0.81[EUR][1000 genomes]
rs890181	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs890182	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs890183	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9307531	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv469710	chr4:124474286-124623722	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv482747	chr4:124474286-124623722	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830047	chr4:124504051-124699142	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv879874	chr4:124550693-124607201	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124595000-124610600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:124598400-124607800	Weak transcription	Gastric	stomach
3	chr4:124598400-124613200	Weak transcription	Psoas Muscle	Psoas
4	chr4:124604800-124606000	ZNF genes & repeats	Fetal Muscle Leg	muscle
5	chr4:124604800-124606400	ZNF genes & repeats	Fetal Intestine Small	intestine
6	chr4:124604800-124606600	ZNF genes & repeats	Fetal Intestine Large	intestine
7	chr4:124605200-124605600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr4:124605200-124606000	Strong transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:124605400-124606400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

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