Variant report

Variant	rs2553456
Chromosome Location	chr4:106751028-106751029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10017111	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10516521	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10516524	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11097896	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1294668	0.94[ASN][1000 genomes]
rs1294671	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1294672	0.94[ASN][1000 genomes]
rs1447093	0.83[CEU][hapmap]
rs17260856	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17261786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17262443	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17262457	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17263714	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17264527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1862081	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1982346	0.83[ASN][1000 genomes]
rs2098571	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2112047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2112049	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2161046	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2193855	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2193856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2193857	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2216515	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216516	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2256746	1.00[ASN][1000 genomes]
rs2544399	1.00[ASN][1000 genomes]
rs2544401	0.82[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2544402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544403	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2544414	0.94[ASN][1000 genomes]
rs2544417	0.92[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544418	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2544424	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2544426	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2544429	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2544430	1.00[ASN][1000 genomes]
rs2553446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2553448	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2553451	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2553452	0.94[ASN][1000 genomes]
rs2553457	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2553460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2553461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2553463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2553464	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2553466	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2553467	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2553469	1.00[ASN][1000 genomes]
rs2553470	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2553471	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2866781	1.00[ASN][1000 genomes]
rs3943980	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56843185	0.94[ASN][1000 genomes]
rs73837092	0.83[ASN][1000 genomes]
rs73837096	0.83[ASN][1000 genomes]
rs73839004	0.94[ASN][1000 genomes]
rs73839006	0.94[ASN][1000 genomes]
rs73839007	0.94[ASN][1000 genomes]
rs73839008	0.94[ASN][1000 genomes]
rs73839010	0.94[ASN][1000 genomes]
rs7676226	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526871	chr4:106750214-106751028	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106695200-106757000	Weak transcription	Primary B cells from cord blood	blood
2	chr4:106703200-106755600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:106729200-106763400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:106730200-106764200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:106730400-106756400	Weak transcription	Fetal Stomach	stomach
6	chr4:106730400-106757600	Weak transcription	Psoas Muscle	Psoas
7	chr4:106730800-106761800	Weak transcription	HSMM	muscle
8	chr4:106732600-106755800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:106734400-106756400	Weak transcription	Fetal Thymus	thymus
10	chr4:106737000-106768600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:106737200-106754200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:106738800-106757200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:106741600-106756400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:106742000-106761200	Weak transcription	HSMMtube	muscle
15	chr4:106742000-106763600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr4:106742000-106766200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr4:106742200-106757000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:106742400-106766600	Weak transcription	Aorta	Aorta
19	chr4:106742600-106756200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:106743200-106756200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr4:106743400-106757000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:106743600-106768600	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr4:106744000-106753400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:106744000-106755600	Weak transcription	Fetal Lung	lung
25	chr4:106744000-106768600	Weak transcription	Adipose Nuclei	Adipose
26	chr4:106744200-106764400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr4:106744800-106756600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:106745000-106763800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr4:106745200-106759400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr4:106745400-106757600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr4:106745600-106756400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr4:106745800-106769000	Weak transcription	Primary B cells from peripheral blood	blood
33	chr4:106746000-106756400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr4:106746000-106772200	Weak transcription	Left Ventricle	heart
35	chr4:106746200-106756200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr4:106746400-106776400	Weak transcription	Gastric	stomach
37	chr4:106746800-106753600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr4:106746800-106755400	Weak transcription	GM12878-XiMat	blood
39	chr4:106747000-106768200	Weak transcription	K562	blood
40	chr4:106747000-106771800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr4:106747400-106757200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr4:106747400-106767000	Weak transcription	A549	lung
43	chr4:106747400-106772000	Weak transcription	Fetal Intestine Large	intestine
44	chr4:106748200-106763200	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr4:106748600-106756400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr4:106748600-106756400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr4:106748600-106756400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr4:106748600-106756400	Weak transcription	Thymus	Thymus
49	chr4:106748800-106755400	Weak transcription	Dnd41	blood
50	chr4:106749400-106756200	Weak transcription	Primary T cells from cord blood	blood

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