Variant report

Variant	rs2554075
Chromosome Location	chr4:73703691-73703692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10000120	0.80[ASN][1000 genomes]
rs10018982	0.83[ASN][1000 genomes]
rs10518110	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10938044	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10938045	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10938046	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10938047	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13123696	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16848685	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1813296	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs186403	0.84[ASN][1000 genomes]
rs188794	0.87[AMR][1000 genomes]
rs188795	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs189776	0.83[ASN][1000 genomes]
rs221592	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs221593	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs221595	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2554074	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2554076	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2554078	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2614295	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2614298	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2614353	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs315311	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs315312	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs315313	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs315314	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs315315	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs315317	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs315320	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs315322	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs315323	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs315325	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs315327	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs315328	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs315330	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs315331	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs315332	0.84[ASN][1000 genomes]
rs315335	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs315338	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs315339	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs315340	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs315342	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs315343	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs315344	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs315364	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs315365	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs315373	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4146483	0.85[ASN][1000 genomes]
rs4398492	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4642218	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs922256	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949371	chr4:73678470-74094500	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv2757068	chr4:73683018-73770378	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759261	chr4:73683018-73770378	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv436952	chr4:73693532-73759117	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv437923	chr4:73699066-73758650	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:73687200-73707800	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links