Variant report

Variant	rs2555355
Chromosome Location	chr15:44878413-44878414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11070431	0.83[YRI][hapmap]
rs16965650	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs3759871	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44842000-44951600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:44858000-44900200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:44858400-44897200	Strong transcription	Fetal Stomach	stomach
4	chr15:44858600-44880800	Strong transcription	Fetal Intestine Small	intestine
5	chr15:44859000-44878800	Weak transcription	Stomach Mucosa	stomach
6	chr15:44859000-44881200	Weak transcription	Fetal Brain Male	brain
7	chr15:44859000-44887800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:44859800-44880800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:44859800-44887600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:44861600-44882200	Weak transcription	Psoas Muscle	Psoas
11	chr15:44863400-44881000	Weak transcription	Right Ventricle	heart
12	chr15:44867400-44954600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:44867600-44879400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:44867600-44900000	Weak transcription	Fetal Heart	heart
15	chr15:44869800-44887400	Strong transcription	Fetal Lung	lung
16	chr15:44870000-44928800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:44871000-44879000	Weak transcription	Fetal Kidney	kidney
18	chr15:44871200-44951200	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr15:44871400-44890200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:44871400-44907600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:44871400-44932200	Strong transcription	Fetal Muscle Trunk	muscle
22	chr15:44871600-44882400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr15:44871600-44894000	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr15:44871600-44903200	Strong transcription	Adipose Nuclei	Adipose
25	chr15:44871600-44917800	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr15:44871800-44880000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr15:44871800-44881200	Strong transcription	Duodenum Mucosa	Duodenum
28	chr15:44871800-44882800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr15:44871800-44884600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:44871800-44885600	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr15:44871800-44892800	Strong transcription	Osteobl	bone
32	chr15:44871800-44893200	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr15:44871800-44924400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:44871800-44925000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:44872000-44881000	Strong transcription	Liver	Liver
36	chr15:44872000-44885400	Strong transcription	Primary B cells from peripheral blood	blood
37	chr15:44872000-44885400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr15:44872000-44886000	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr15:44872000-44890200	Strong transcription	NH-A	brain
40	chr15:44872000-44891200	Strong transcription	Skeletal Muscle Female	skeletal muscle
41	chr15:44872000-44891400	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr15:44872000-44891600	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr15:44872000-44903600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr15:44872000-44935600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:44872200-44887600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:44872200-44888000	Strong transcription	GM12878-XiMat	blood
47	chr15:44872200-44923200	Strong transcription	Fetal Intestine Large	intestine
48	chr15:44872400-44883400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:44872400-44890200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr15:44872400-44891200	Strong transcription	Brain Inferior Temporal Lobe	brain

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