Variant report

Variant	rs2555626
Chromosome Location	chr4:175379046-175379047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11942381	0.81[EUR][1000 genomes]
rs2555633	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2612656	0.80[CHD][hapmap]
rs2612666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4303956	0.81[EUR][1000 genomes]
rs7669690	0.81[EUR][1000 genomes]
rs7685956	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175371800-175382600	Weak transcription	Small Intestine	intestine
2	chr4:175374600-175382800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:175376000-175379400	Enhancers	Colon Smooth Muscle	Colon
4	chr4:175376400-175381600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:175376600-175381600	Weak transcription	Fetal Intestine Small	intestine
6	chr4:175377000-175379600	Enhancers	Rectal Smooth Muscle	rectum
7	chr4:175378600-175379200	Enhancers	Fetal Lung	lung
8	chr4:175378600-175379200	Active TSS	Stomach Smooth Muscle	stomach
9	chr4:175378600-175379400	Enhancers	Stomach Mucosa	stomach
10	chr4:175378800-175379200	Enhancers	Fetal Stomach	stomach
11	chr4:175378800-175379200	Enhancers	Gastric	stomach
12	chr4:175379000-175379200	Enhancers	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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