Variant report

Variant	rs2558229
Chromosome Location	chrY:6073227-6073228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758598	chrY:5955799-6326452	Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA	24 gene(s)	inside rSNPs	diseases
2	esv2758903	chrY:5955799-6326452	Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv469876	chrY:6032613-6198231	Enhancers Weak transcription	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv482633	chrY:6032613-6198231	Enhancers Weak transcription	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv428815	chrY:6032613-6198231	Enhancers Weak transcription	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv469743	chrY:6051739-6202072	Weak transcription Enhancers	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv482423	chrY:6051739-6202072	Enhancers Weak transcription	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv428816	chrY:6051739-6202072	Weak transcription Enhancers	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrY:6073000-6073400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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