Variant report

Variant	rs255860
Chromosome Location	chr5:112755607-112755608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1057827	0.85[EUR][1000 genomes]
rs168365	0.86[EUR][1000 genomes]
rs168366	0.86[EUR][1000 genomes]
rs171180	0.86[EUR][1000 genomes]
rs191553	0.86[EUR][1000 genomes]
rs2248930	0.86[EUR][1000 genomes]
rs3097242	0.82[EUR][1000 genomes]
rs348924	0.86[EUR][1000 genomes]
rs348925	0.86[EUR][1000 genomes]
rs348926	0.84[EUR][1000 genomes]
rs348928	0.86[EUR][1000 genomes]
rs348929	0.86[EUR][1000 genomes]
rs348930	0.86[EUR][1000 genomes]
rs348931	0.86[EUR][1000 genomes]
rs348932	0.86[EUR][1000 genomes]
rs348944	0.85[EUR][1000 genomes]
rs348946	0.85[EUR][1000 genomes]
rs348947	0.86[EUR][1000 genomes]
rs348948	0.86[EUR][1000 genomes]
rs348951	0.84[EUR][1000 genomes]
rs348952	0.84[EUR][1000 genomes]
rs348954	0.86[EUR][1000 genomes]
rs348955	0.86[EUR][1000 genomes]
rs348956	0.86[EUR][1000 genomes]
rs348957	0.86[EUR][1000 genomes]
rs348958	0.86[EUR][1000 genomes]
rs348960	0.86[EUR][1000 genomes]
rs348961	0.86[EUR][1000 genomes]
rs348962	0.86[EUR][1000 genomes]
rs348963	0.86[EUR][1000 genomes]
rs364738	0.87[EUR][1000 genomes]
rs366219	0.82[EUR][1000 genomes]
rs367943	0.86[EUR][1000 genomes]
rs388363	0.86[EUR][1000 genomes]
rs444322	0.86[EUR][1000 genomes]
rs451425	0.87[EUR][1000 genomes]
rs451453	0.82[EUR][1000 genomes]
rs455435	0.87[EUR][1000 genomes]
rs458044	0.86[EUR][1000 genomes]
rs460079	0.86[EUR][1000 genomes]
rs463167	0.87[EUR][1000 genomes]
rs463249	0.82[EUR][1000 genomes]
rs644154	0.86[EUR][1000 genomes]
rs9800375	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv329948	chr5:112754124-112755837	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112752000-112758200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:112753600-112761000	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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