Variant report

Variant	rs255920
Chromosome Location	chr5:111384439-111384440
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1035858	0.82[ASN][1000 genomes]
rs154047	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs168875	0.99[ASN][1000 genomes]
rs255910	0.88[ASN][1000 genomes]
rs255916	0.99[ASN][1000 genomes]
rs255928	0.81[ASN][1000 genomes]
rs256047	0.83[ASN][1000 genomes]
rs256277	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs25798	0.94[ASN][1000 genomes]
rs26539	0.81[ASN][1000 genomes]
rs26540	0.81[ASN][1000 genomes]
rs26541	0.81[ASN][1000 genomes]
rs26542	0.81[ASN][1000 genomes]
rs26560	0.80[ASN][1000 genomes]
rs26561	0.81[ASN][1000 genomes]
rs26562	0.81[ASN][1000 genomes]
rs26563	0.81[ASN][1000 genomes]
rs26574	0.95[ASN][1000 genomes]
rs27408	0.92[ASN][1000 genomes]
rs27409	0.94[ASN][1000 genomes]
rs27412	0.94[ASN][1000 genomes]
rs27535	0.81[ASN][1000 genomes]
rs27983	0.94[ASN][1000 genomes]
rs28037	0.93[ASN][1000 genomes]
rs30389	0.94[ASN][1000 genomes]
rs30390	0.94[ASN][1000 genomes]
rs30391	0.90[ASN][1000 genomes]
rs39842	0.94[ASN][1000 genomes]
rs39843	0.94[ASN][1000 genomes]
rs39844	0.94[ASN][1000 genomes]
rs40568	0.95[ASN][1000 genomes]
rs41142	0.81[ASN][1000 genomes]
rs6883249	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1015302	chr5:111339022-111802947	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv537861	chr5:111339022-111802947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	esv2829846	chr5:111341445-111435769	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	nsv1025678	chr5:111365866-111417198	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111384200-111385400	Weak transcription	Gastric	stomach

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