The 2.0 version of rSNPBase

Variant report

Variant rs2560824
Chromosome Location chr5:16587325-16587326
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16543200-16591600 Weak transcription Primary T killer naive cells fromperipheralblood blood
2 chr5:16543600-16589800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
3 chr5:16571400-16588200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
4 chr5:16574800-16589800 Weak transcription Thymus Thymus
5 chr5:16575000-16588000 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr5:16575600-16591600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr5:16575800-16587600 Weak transcription Primary T helper cells fromperipheralblood blood
8 chr5:16578400-16606800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr5:16579400-16593200 Weak transcription ES-I3 Cell Line embryonic stem cell
10 chr5:16581000-16598400 Weak transcription Stomach Smooth Muscle stomach
11 chr5:16581200-16588600 Weak transcription Fetal Heart heart
12 chr5:16581400-16593200 Weak transcription Right Ventricle heart
13 chr5:16581400-16596000 Weak transcription Fetal Brain Female brain
14 chr5:16583400-16591400 Weak transcription Primary T cells fromperipheralblood blood
15 chr5:16583400-16599600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr5:16584400-16591200 Weak transcription HUES48 Cell Line embryonic stem cell
17 chr5:16584400-16592400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr5:16585400-16615600 Weak transcription Primary B cells from cord blood blood
19 chr5:16585600-16588000 Weak transcription Liver Liver
20 chr5:16585600-16588000 Weak transcription Psoas Muscle Psoas
21 chr5:16585600-16588400 Weak transcription Brain Inferior Temporal Lobe brain
22 chr5:16585600-16588400 Weak transcription Pancreas Pancrea
23 chr5:16585600-16588400 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr5:16585600-16588400 Weak transcription HepG2 liver
25 chr5:16585600-16600000 Weak transcription Gastric stomach
26 chr5:16585800-16587800 Weak transcription Lung lung
27 chr5:16585800-16588400 Weak transcription Brain Angular Gyrus brain
28 chr5:16585800-16588400 Weak transcription Stomach Mucosa stomach
29 chr5:16585800-16605000 Weak transcription Fetal Intestine Large intestine
30 chr5:16586000-16588000 Weak transcription Left Ventricle heart
31 chr5:16586000-16594800 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr5:16586400-16587800 Weak transcription Brain Substantia Nigra brain
33 chr5:16586600-16587800 Weak transcription Primary T helper cells PMA-I stimulated --
34 chr5:16586600-16587800 Weak transcription Brain Cingulate Gyrus brain
35 chr5:16586600-16593200 Weak transcription Brain Germinal Matrix brain
36 chr5:16586800-16587400 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr5:16586800-16587400 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
38 chr5:16586800-16587400 Weak transcription Brain Anterior Caudate brain
39 chr5:16587000-16587600 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
40 chr5:16587000-16591000 Strong transcription Primary T cells from cord blood blood
41 chr5:16587200-16587400 ZNF genes & repeats Brain Hippocampus Middle brain
42 chr5:16587200-16590200 Strong transcription Primary T regulatory cells fromperipheralblood blood
43 chr5:16587200-16590400 Strong transcription Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015