Variant report

Variant	rs2561414
Chromosome Location	chr6:39139368-39139369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2561413	0.84[AFR][1000 genomes]
rs2561415	1.00[AFR][1000 genomes]
rs2561423	0.84[AFR][1000 genomes]
rs2815073	1.00[AFR][1000 genomes]
rs2815076	1.00[AFR][1000 genomes]
rs2815077	1.00[AFR][1000 genomes]
rs2815078	1.00[AFR][1000 genomes]
rs2815084	1.00[AFR][1000 genomes]
rs2815089	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39134600-39139400	Weak transcription	Right Atrium	heart
2	chr6:39134800-39139400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:39135600-39139400	Weak transcription	Fetal Lung	lung
4	chr6:39136400-39139400	Weak transcription	Fetal Stomach	stomach
5	chr6:39138000-39139800	Weak transcription	Gastric	stomach
6	chr6:39138600-39139600	Weak transcription	Pancreas	Pancrea
7	chr6:39138800-39140000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:39138800-39146400	Weak transcription	Stomach Mucosa	stomach
9	chr6:39139000-39139800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
10	chr6:39139000-39140400	ZNF genes & repeats	Fetal Intestine Small	intestine
11	chr6:39139200-39140000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:39139200-39140000	ZNF genes & repeats	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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