Variant report

Variant	rs2562555
Chromosome Location	chr5:36575972-36575973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1428971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2731901	0.89[AFR][1000 genomes]
rs2731902	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2731903	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2731911	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv881025	chr5:36575021-36613053	Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36571200-36584000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr5:36571200-36584000	Weak transcription	Brain Substantia Nigra	brain
3	chr5:36571600-36577200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:36572800-36576200	Enhancers	HMEC	breast
5	chr5:36573000-36577400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:36573200-36577400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:36575000-36576000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:36575200-36576000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:36575400-36576000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:36575600-36576200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr5:36575600-36576600	Weak transcription	HSMM	muscle
12	chr5:36575800-36576200	Enhancers	NH-A	brain
13	chr5:36575800-36576400	Enhancers	HUVEC	blood vessel
14	chr5:36575800-36576800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:36575800-36577400	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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