Variant report

Variant	rs2564915
Chromosome Location	chr11:105805299-105805300
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2249031	0.85[CEU][hapmap];0.92[TSI][hapmap]
rs2847182	0.82[CEU][hapmap];1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105795200-105806800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:105795400-105805600	Weak transcription	Brain Substantia Nigra	brain
3	chr11:105795600-105805600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:105797200-105806400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:105799400-105810200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:105800600-105805600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:105801000-105805400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:105801000-105805600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:105801000-105806400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:105801000-105806400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:105801000-105806400	Weak transcription	Hela-S3	cervix
12	chr11:105801200-105806200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:105801600-105807400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:105804400-105805400	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:105804600-105807800	Enhancers	Brain Cingulate Gyrus	brain
16	chr11:105805200-105806600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:105805200-105808200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr11:105805200-105809000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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