Variant report

Variant	rs2567312
Chromosome Location	chr9:104032801-104032802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2567317	0.87[GIH][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap]
rs2987729	0.87[GIH][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap]
rs2987742	0.87[GIH][hapmap];0.84[TSI][hapmap]
rs9886802	1.00[ASW][hapmap];0.88[MEX][hapmap];0.88[MKK][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2567312	C9orf125	cis	cerebellum	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104031400-104034000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:104031600-104033800	Active TSS	Brain Substantia Nigra	brain
3	chr9:104031600-104034200	Active TSS	Brain Hippocampus Middle	brain
4	chr9:104031600-104034800	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr9:104031800-104033000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:104031800-104033000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr9:104031800-104033000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr9:104031800-104033600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr9:104031800-104033800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:104031800-104033800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr9:104031800-104034000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr9:104031800-104034000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:104031800-104034000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr9:104031800-104034000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:104031800-104034000	Active TSS	Brain Angular Gyrus	brain
16	chr9:104031800-104034000	Active TSS	Brain Anterior Caudate	brain
17	chr9:104031800-104034000	Active TSS	Brain Cingulate Gyrus	brain
18	chr9:104032000-104033000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr9:104032000-104036600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr9:104032200-104033400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:104032200-104033600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:104032400-104033400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr9:104032400-104033400	Weak transcription	Esophagus	oesophagus
24	chr9:104032400-104037000	Weak transcription	HepG2	liver
25	chr9:104032400-104037600	Weak transcription	Fetal Brain Male	brain
26	chr9:104032400-104037800	Weak transcription	Fetal Brain Female	brain
27	chr9:104032400-104040800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr9:104032400-104042000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:104032800-104034200	Enhancers	HUES48 Cell Line	embryonic stem cell

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