Variant report

Variant	rs2567980
Chromosome Location	chr12:121635505-121635506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121623572..121625455-chr12:121632945..121635628,2	MCF-7	breast:
2	chr12:121612601..121615211-chr12:121633232..121635825,2	MCF-7	breast:
3	chr12:121633082..121636279-chr12:121645811..121648616,3	K562	blood:
4	chr12:121634221..121637382-chr12:121639150..121642465,4	K562	blood:
5	chr12:121634791..121636567-chr12:121644392..121646560,2	K562	blood:
6	chr12:121633584..121637006-chr12:121640952..121642705,3	K562	blood:

Variant related genes	Relation type
ENSG00000261827	Chromatin interaction
ENSG00000135124	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10774587	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10849852	0.86[AFR][1000 genomes]
rs10849855	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10849856	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10849858	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11065479	0.92[AMR][1000 genomes]
rs11065486	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1169720	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1169727	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1180051	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1182945	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1629287	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1653622	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1653623	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1718117	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2071271	0.81[ASN][1000 genomes]
rs2393849	0.84[ASN][1000 genomes]
rs2393850	0.83[ASN][1000 genomes]
rs25643	0.89[ASN][1000 genomes]
rs2567978	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2567993	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2567994	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2668235	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2668252	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2686362	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs2686363	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2686387	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2686388	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2942063	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58232824	0.84[ASN][1000 genomes]
rs6489799	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs725135	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7298368	0.81[ASN][1000 genomes]
rs930186	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs930187	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv560454	chr12:121457073-121745742	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1054878	chr12:121519880-121761800	Flanking Active TSS Genic enhancers Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv455729	chr12:121525591-121761800	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv560455	chr12:121525591-121761800	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv1050519	chr12:121552964-121756420	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121624200-121647200	Weak transcription	Brain Anterior Caudate	brain
2	chr12:121625600-121647200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr12:121628000-121647200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:121630400-121640400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:121630400-121640800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr12:121630400-121647200	Weak transcription	Brain Hippocampus Middle	brain
7	chr12:121633800-121635800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr12:121634200-121635800	Enhancers	HUVEC	blood vessel
9	chr12:121634400-121635800	Enhancers	Primary T cells from cord blood	blood
10	chr12:121634400-121635800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr12:121634400-121637200	Enhancers	K562	blood
12	chr12:121634800-121635800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr12:121634800-121637800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr12:121635000-121636000	Enhancers	GM12878-XiMat	blood
15	chr12:121635000-121636200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr12:121635000-121640400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr12:121635000-121640800	Weak transcription	Placenta	Placenta
18	chr12:121635200-121635800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr12:121635200-121636200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr12:121635200-121636400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr12:121635200-121640600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr12:121635400-121635800	Enhancers	Monocytes-CD14+_RO01746	blood

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