Variant report

Variant	rs2568042
Chromosome Location	chr11:8899668-8899669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10219366	0.89[EUR][1000 genomes]
rs1025438	0.86[CHD][hapmap];0.86[JPT][hapmap]
rs10734639	0.91[CEU][hapmap];0.88[TSI][hapmap]
rs10769974	0.91[CEU][hapmap];0.91[TSI][hapmap]
rs10769976	0.90[EUR][1000 genomes]
rs10769977	0.91[CEU][hapmap]
rs10840150	0.82[EUR][1000 genomes]
rs10840151	0.91[CEU][hapmap];0.89[TSI][hapmap]
rs10840154	0.91[CEU][hapmap]
rs10840156	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11042121	0.84[EUR][1000 genomes]
rs12798311	0.94[EUR][1000 genomes]
rs2016844	0.85[ASW][hapmap];1.00[CEU][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2056903	0.83[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2116510	0.91[CEU][hapmap];0.80[CHD][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap]
rs2116511	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs2163625	0.91[CEU][hapmap];0.91[TSI][hapmap]
rs2246878	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2247038	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2568029	0.87[YRI][hapmap]
rs2568034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2568069	0.91[CEU][hapmap];0.80[CHD][hapmap];0.86[JPT][hapmap];0.93[TSI][hapmap]
rs2568074	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2568075	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2568077	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2568079	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs2568081	0.95[CEU][hapmap];0.86[JPT][hapmap]
rs2568086	0.89[EUR][1000 genomes]
rs2653556	0.93[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.83[TSI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2653560	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2653562	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2653565	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2653587	0.84[EUR][1000 genomes]
rs2653601	0.85[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2653604	0.91[CEU][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap]
rs2653611	0.91[EUR][1000 genomes]
rs2742487	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs2742488	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs2742491	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs2742493	0.95[CEU][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap]
rs2742495	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs2742496	1.00[CEU][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs2742497	1.00[CEU][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs2742504	0.91[EUR][1000 genomes]
rs2742505	0.91[EUR][1000 genomes]
rs2742512	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2742513	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2742514	0.91[CEU][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap]
rs2742519	0.91[CEU][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap]
rs2742520	0.82[EUR][1000 genomes]
rs2742521	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3751063	1.00[CEU][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs3751066	0.91[CEU][hapmap]
rs3751068	0.91[CEU][hapmap];0.91[TSI][hapmap]
rs3763911	0.95[CEU][hapmap]
rs3763912	0.95[CEU][hapmap];0.89[TSI][hapmap]
rs4909951	1.00[CEU][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs4910068	0.81[LWK][hapmap];0.85[YRI][hapmap]
rs4910181	0.85[EUR][1000 genomes]
rs7106539	0.87[EUR][1000 genomes]
rs7117900	0.88[YRI][hapmap]
rs909464	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9300096	1.00[CEU][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs982273	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2568042	C11orf17	cis	multi-tissue	Pritchard

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8892800-8906600	Weak transcription	Spleen	Spleen
2	chr11:8894000-8903400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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