Variant report

Variant	rs2568535
Chromosome Location	chr5:57077838-57077839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57076424..57079221-chr5:57153690..57156496,2	MCF-7	breast:
2	chr5:57076851..57079934-chr5:57754416..57757350,4	MCF-7	breast:
3	chr5:57077792..57079742-chr5:57748468..57750917,2	MCF-7	breast:
4	chr5:57077135..57082051-chr5:57753020..57756988,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1016458	0.87[CHB][hapmap];0.90[YRI][hapmap]
rs11738352	0.87[CHB][hapmap];0.90[YRI][hapmap]
rs11749778	0.86[CHB][hapmap];0.84[YRI][hapmap]
rs12519846	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13186793	0.80[AFR][1000 genomes]
rs1347072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1476938	0.86[CHB][hapmap];0.90[YRI][hapmap]
rs1816391	0.83[ASN][1000 genomes]
rs1835876	0.83[ASN][1000 genomes]
rs2053013	0.83[ASN][1000 genomes]
rs2215813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408851	0.82[CEU][hapmap];0.87[CHB][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes]
rs2539731	0.86[CHB][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs2539732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2539734	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2568533	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2568534	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2568536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898030	0.83[ASN][1000 genomes]
rs2898031	0.82[ASN][1000 genomes]
rs35264987	0.80[AFR][1000 genomes]
rs35483666	0.83[ASN][1000 genomes]
rs36055353	0.80[AFR][1000 genomes]
rs4700229	0.83[ASN][1000 genomes]
rs4700230	0.83[ASN][1000 genomes]
rs56009860	0.80[AFR][1000 genomes]
rs56035618	0.81[AFR][1000 genomes]
rs62358440	0.80[AFR][1000 genomes]
rs62358441	0.80[AFR][1000 genomes]
rs6887425	0.86[CHB][hapmap];0.88[YRI][hapmap]
rs6892809	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs757635	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs854025	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs854026	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs854027	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs854030	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs854032	0.99[ASN][1000 genomes]
rs854034	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs887868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs987671	0.86[CHB][hapmap];0.90[YRI][hapmap]
rs988658	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57072600-57079600	Weak transcription	Ovary	ovary
2	chr5:57075400-57080400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:57076000-57078200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:57076400-57078200	Weak transcription	HSMM	muscle
5	chr5:57076400-57078800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:57076400-57078800	Weak transcription	Brain Anterior Caudate	brain
7	chr5:57076400-57078800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr5:57076400-57078800	Weak transcription	Osteobl	bone
9	chr5:57076400-57079200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr5:57076400-57079400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:57076400-57079400	Weak transcription	Aorta	Aorta
12	chr5:57076400-57080200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:57076400-57081800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:57076600-57078200	Weak transcription	Placenta	Placenta
15	chr5:57076600-57078600	Weak transcription	NHDF-Ad	bronchial
16	chr5:57076600-57078800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr5:57076600-57078800	Weak transcription	HSMMtube	muscle
18	chr5:57076600-57079000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:57076600-57079000	Weak transcription	Fetal Lung	lung
20	chr5:57076600-57079600	Weak transcription	Right Atrium	heart
21	chr5:57076600-57079600	Weak transcription	HMEC	breast
22	chr5:57077000-57078400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:57077000-57079400	Weak transcription	HUVEC	blood vessel
24	chr5:57077000-57080000	Weak transcription	Stomach Mucosa	stomach
25	chr5:57077200-57079400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr5:57077400-57079000	Weak transcription	Fetal Muscle Leg	muscle
27	chr5:57077800-57079000	Enhancers	Adipose Nuclei	Adipose

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