Variant report

Variant	rs2569485
Chromosome Location	chr19:51578437-51578438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10445581	0.86[ASN][1000 genomes]
rs10500304	0.82[ASN][1000 genomes]
rs16988866	0.88[ASN][1000 genomes]
rs1880416	0.86[ASN][1000 genomes]
rs2569488	0.98[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9304708	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34104	chr19:51566170-51641675	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51574200-51582600	Weak transcription	Pancreas	Pancrea
2	chr19:51574800-51579200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr19:51574800-51579800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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