Variant report
| Variant | rs2569536 |
|---|---|
| Chromosome Location | chr19:51404513-51404514 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr19:51402463..51404550-chr19:51522904..51525156,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000129451 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs1090649 | 0.81[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1654513 | 0.89[ASN][1000 genomes] |
| rs1654554 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1654556 | 0.93[ASN][1000 genomes] |
| rs1701925 | 0.84[ASN][1000 genomes] |
| rs1701926 | 0.81[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1701927 | 0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2739496 | 0.84[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs806019 | 0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1060760 | chr19:50883425-51463712 | ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 99 gene(s) | inside rSNPs | diseases |
| 2 | nsv1058177 | chr19:50984774-51463712 | Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 84 gene(s) | inside rSNPs | diseases |
| 3 | nsv511623 | chr19:51400775-51408842 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
