Variant report

Variant	rs257339
Chromosome Location	chr16:64997590-64997591
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs257338	0.80[AFR][1000 genomes]
rs35196	0.80[AFR][1000 genomes]
rs35211	0.80[AFR][1000 genomes]
rs7498207	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64979000-64998000	Weak transcription	HMEC	breast
2	chr16:64980000-65005200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr16:64983000-65003200	Weak transcription	Brain Substantia Nigra	brain
4	chr16:64983200-65004400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr16:64984400-65002400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr16:64984600-65002200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr16:64984800-65004600	Weak transcription	Fetal Brain Female	brain
8	chr16:64984800-65005400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr16:64985000-65002200	Weak transcription	Brain Anterior Caudate	brain
10	chr16:64985000-65002400	Weak transcription	Brain Angular Gyrus	brain
11	chr16:64985000-65004400	Weak transcription	Fetal Intestine Large	intestine
12	chr16:64985000-65005200	Weak transcription	Brain Germinal Matrix	brain
13	chr16:64985000-65005800	Weak transcription	Aorta	Aorta
14	chr16:64985000-65011000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr16:64985200-65004400	Weak transcription	Fetal Brain Male	brain
16	chr16:64985400-65004200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr16:64985400-65004400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr16:64985400-65005800	Weak transcription	Spleen	Spleen
19	chr16:64985400-65015200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr16:64986200-65003000	Weak transcription	Brain Hippocampus Middle	brain
21	chr16:64986200-65004200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr16:64986400-65004000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr16:64986400-65004200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr16:64987000-65002600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr16:64987000-65003200	Weak transcription	NHLF	lung
26	chr16:64988600-64999400	Weak transcription	Fetal Kidney	kidney
27	chr16:64989600-65001000	Weak transcription	Fetal Stomach	stomach
28	chr16:64991200-65004200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr16:64991400-64999200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr16:64991400-65032600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr16:64992800-64998200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr16:64993200-64998000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr16:64993600-64999000	Weak transcription	Ovary	ovary
34	chr16:64994400-64999200	Weak transcription	NH-A	brain
35	chr16:64994600-64998000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr16:64994800-64999200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr16:64995000-65004400	Weak transcription	Fetal Muscle Leg	muscle
38	chr16:64995200-64999200	Weak transcription	HSMM	muscle
39	chr16:64995400-65000600	Weak transcription	NHDF-Ad	bronchial
40	chr16:64996200-64998400	Enhancers	HUVEC	blood vessel
41	chr16:64996400-64998400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr16:64996400-64999800	Strong transcription	Fetal Lung	lung
43	chr16:64996800-64998000	Weak transcription	Osteobl	bone
44	chr16:64996800-64998200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr16:64996800-65002200	Weak transcription	HSMMtube	muscle
46	chr16:64997400-64998400	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links