Variant report

Variant	rs2575077
Chromosome Location	chr4:20317786-20317787
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1323065	1.00[ASN][1000 genomes]
rs2760134	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4552453	1.00[ASN][1000 genomes]
rs508726	1.00[ASN][1000 genomes]
rs527371	1.00[ASN][1000 genomes]
rs529193	1.00[ASN][1000 genomes]
rs593943	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs611907	1.00[ASN][1000 genomes]
rs615576	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs624354	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs625909	1.00[ASN][1000 genomes]
rs643189	1.00[ASN][1000 genomes]
rs643562	1.00[ASN][1000 genomes]
rs793380	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv593793	chr4:20282334-20333722	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878740	chr4:20292239-20333722	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20291800-20319000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:20299400-20319000	Weak transcription	NHLF	lung
3	chr4:20306200-20325600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:20313000-20318600	Weak transcription	Brain Angular Gyrus	brain
5	chr4:20313600-20319000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:20314000-20318600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:20314000-20319000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:20315200-20318000	Weak transcription	Brain Anterior Caudate	brain
9	chr4:20315600-20325600	Weak transcription	Lung	lung
10	chr4:20315600-20328000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:20316000-20318400	Weak transcription	Fetal Lung	lung
12	chr4:20316000-20321800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:20316800-20318600	Enhancers	NHDF-Ad	bronchial
14	chr4:20317000-20317800	Enhancers	Colon Smooth Muscle	Colon
15	chr4:20317000-20319000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:20317000-20322200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr4:20317000-20323400	Enhancers	Brain Hippocampus Middle	brain
18	chr4:20317200-20319000	Weak transcription	Brain Substantia Nigra	brain
19	chr4:20317600-20317800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr4:20317600-20319000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links