Variant report

Variant	rs2575289
Chromosome Location	chr12:64625278-64625279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10878126	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1162975	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12304767	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1464055	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1657048	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4491343	0.86[EUR][1000 genomes]
rs790018	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs790020	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64616600-64626000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:64616600-64626200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr12:64623400-64625800	Enhancers	Brain Substantia Nigra	brain
4	chr12:64623400-64639400	Weak transcription	Brain Angular Gyrus	brain
5	chr12:64624400-64626200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr12:64624800-64630400	Weak transcription	Brain Anterior Caudate	brain
7	chr12:64624800-64630400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr12:64624800-64630600	Weak transcription	Brain Hippocampus Middle	brain
9	chr12:64624800-64630800	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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