Variant report

Variant	rs2576148
Chromosome Location	chr13:54712264-54712265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1537644	0.96[AFR][1000 genomes]
rs1832016	0.96[AFR][1000 genomes]
rs2576118	1.00[AFR][1000 genomes]
rs2576132	1.00[AFR][1000 genomes]
rs2576143	1.00[AFR][1000 genomes]
rs2782518	0.96[AFR][1000 genomes]
rs2784552	1.00[YRI][hapmap]
rs2784558	1.00[AFR][1000 genomes]
rs515604	0.96[AFR][1000 genomes]
rs632059	0.83[AFR][1000 genomes]
rs795635	0.96[AFR][1000 genomes]
rs795642	0.96[AFR][1000 genomes]
rs795643	0.96[AFR][1000 genomes]
rs795652	0.89[AFR][1000 genomes]
rs795655	0.92[AFR][1000 genomes]
rs795656	0.92[AFR][1000 genomes]
rs795658	1.00[AFR][1000 genomes]
rs7993452	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375545	chr13:54517432-54908108	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1049	chr13:54684354-54728981	Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv561701	chr13:54711276-54826104	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54708600-54718800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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