Variant report

Variant	rs2577073
Chromosome Location	chr18:28723089-28723090
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1370450	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1437605	0.83[EUR][1000 genomes]
rs1437608	0.91[EUR][1000 genomes]
rs1437609	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1437610	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1437611	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1437612	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1816632	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1816633	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2118341	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2118342	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2118343	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2164765	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2164766	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2254170	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2254172	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2577067	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2741000	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2741004	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851996	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4325646	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4344831	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4361001	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6506886	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6506892	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7238415	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7243239	0.91[EUR][1000 genomes]
rs8090853	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8096368	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs951298	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs976749	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs976750	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs976751	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs991482	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9947328	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9948366	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9952351	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9955032	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9955430	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9959845	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9960487	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530788	chr18:28596461-28751891	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv820166	chr18:28721592-28723660	Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv2036170	chr18:28723088-28723090	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28710600-28740800	Weak transcription	Primary T cells from cord blood	blood
2	chr18:28712600-28726200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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