Variant report

Variant	rs2577126
Chromosome Location	chr1:220356184-220356185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs11118488	1.00[MEX][hapmap]
rs11800305	1.00[MEX][hapmap]
rs11807323	0.83[AFR][1000 genomes]
rs11807333	1.00[MEX][hapmap]
rs2647471	0.86[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.82[YRI][hapmap]
rs2647472	0.86[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap]
rs2667960	0.86[ASW][hapmap];0.83[MKK][hapmap]
rs2789785	0.86[ASW][hapmap]
rs2808017	0.83[MKK][hapmap]
rs2808025	0.83[YRI][hapmap]
rs904327	0.86[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.82[YRI][hapmap]

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220305400-220376600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr1:220325000-220398400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:220330600-220363600	Weak transcription	Fetal Brain Male	brain
4	chr1:220330800-220378600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:220341000-220361000	Weak transcription	Small Intestine	intestine
6	chr1:220341200-220364000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:220341200-220369200	Weak transcription	Fetal Heart	heart
8	chr1:220343800-220357200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:220344800-220365600	Weak transcription	Brain Substantia Nigra	brain
10	chr1:220345200-220361200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr1:220345400-220361800	Weak transcription	Colonic Mucosa	Colon
12	chr1:220345400-220391400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr1:220345600-220361400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:220346600-220358000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr1:220346600-220360800	Weak transcription	Fetal Kidney	kidney
16	chr1:220346600-220363600	Weak transcription	Brain Angular Gyrus	brain
17	chr1:220348000-220357800	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr1:220348000-220386800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:220348200-220356400	Strong transcription	Primary B cells from peripheral blood	blood
20	chr1:220349600-220356800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:220349600-220369600	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr1:220349800-220356400	Strong transcription	Fetal Lung	lung
23	chr1:220349800-220357000	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr1:220349800-220357000	Strong transcription	Liver	Liver
25	chr1:220349800-220357200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr1:220349800-220359600	Strong transcription	Primary B cells from cord blood	blood
27	chr1:220349800-220362600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:220350000-220356400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr1:220350000-220357200	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr1:220350000-220386200	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr1:220350200-220359400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr1:220350200-220360600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr1:220350400-220356600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:220350600-220361200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr1:220350600-220387800	Weak transcription	Stomach Mucosa	stomach
36	chr1:220350800-220359800	Weak transcription	NHEK	skin
37	chr1:220350800-220360800	Weak transcription	Aorta	Aorta
38	chr1:220350800-220360800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr1:220350800-220361600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr1:220350800-220365200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr1:220350800-220365200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr1:220350800-220365200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr1:220350800-220365200	Weak transcription	Fetal Brain Female	brain
44	chr1:220350800-220365200	Weak transcription	Spleen	Spleen
45	chr1:220350800-220366000	Weak transcription	Esophagus	oesophagus
46	chr1:220350800-220378800	Weak transcription	Pancreas	Pancrea
47	chr1:220351800-220358800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr1:220351800-220360000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr1:220352800-220356800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr1:220352800-220358400	Strong transcription	Fetal Intestine Large	intestine

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