Variant report

Variant	rs2577347
Chromosome Location	chr10:118057441-118057442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10749205	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs1362217	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1419875	0.94[EUR][1000 genomes]
rs1860400	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2568920	0.92[CEU][hapmap]
rs2568921	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2577356	0.93[CEU][hapmap]
rs2577361	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs758577	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2577347	PNLIPRP3	cis	parietal	SCAN
rs2577347	TRUB1	cis	parietal	SCAN
rs2577347	TBC1D5	trans	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118056000-118059000	Weak transcription	Pancreas	Pancrea
2	chr10:118056400-118058600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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