Variant report

Variant	rs2578524
Chromosome Location	chr5:5528853-5528854
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs2246106	0.89[AMR][1000 genomes]
rs2246112	0.91[AMR][1000 genomes]
rs2264076	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2578517	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2578518	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2578520	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2578521	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2578522	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2578525	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2578526	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2578528	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2578529	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2578531	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2578532	0.91[AMR][1000 genomes]
rs2591699	0.91[AMR][1000 genomes]
rs2591700	0.89[AMR][1000 genomes]
rs2591701	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2591702	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2591703	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2591704	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2591705	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2591706	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2591707	0.92[ASN][1000 genomes]
rs2591708	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2619830	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2619831	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2619832	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2619833	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2619834	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2619835	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2619836	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2652702	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2652703	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2652704	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2652706	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2652722	0.91[AMR][1000 genomes]
rs2652724	0.91[AMR][1000 genomes]
rs2652725	0.91[AMR][1000 genomes]
rs2652726	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2652727	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757981	chr5:5447098-5764620	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2759319	chr5:5447098-5764620	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv596941	chr5:5511990-5636458	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv596942	chr5:5511990-5722063	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5521400-5539200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:5524600-5533400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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