Variant report

Variant	rs2579077
Chromosome Location	chr12:51257241-51257242
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10160844	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10459238	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs10459239	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs10747599	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs10783395	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10783405	1.00[CEU][hapmap]
rs10783406	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10876105	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1096030	1.00[CEU][hapmap];0.97[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1096031	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1103441	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11169587	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs11169593	0.81[EUR][1000 genomes]
rs11169603	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1642997	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2554854	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4483656	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4768937	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs4768938	0.86[CEU][hapmap];0.96[EUR][1000 genomes]
rs7979616	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs829126	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs829128	1.00[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs829129	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs829131	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs829132	1.00[CEU][hapmap]
rs829139	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs829141	1.00[CEU][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs829142	1.00[CEU][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs829143	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs829144	1.00[CEU][hapmap];0.97[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs844175	1.00[CEU][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs860476	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3414501	chr12:51174503-51534707	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv899078	chr12:51213433-51286750	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51252000-51259600	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links