Variant report

Variant	rs258056
Chromosome Location	chr5:118774014-118774015
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs193917	1.00[AMR][1000 genomes]
rs2258658	1.00[EUR][1000 genomes]
rs258048	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030717	chr5:118709310-118836951	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427732	chr5:118730999-119034741	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv4974	chr5:118750259-118795376	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1024455	chr5:118770429-119487982	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv3450209	chr5:118773640-118774022	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118769800-118774200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:118771400-118774800	Weak transcription	Stomach Mucosa	stomach
3	chr5:118771600-118774600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:118771600-118774800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr5:118771800-118774400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr5:118773000-118774400	Enhancers	Primary hematopoietic stem cells	blood
7	chr5:118773000-118774400	Enhancers	K562	blood
8	chr5:118773000-118774800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr5:118773600-118774400	Enhancers	HepG2	liver
10	chr5:118773600-118775600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:118774000-118774200	Enhancers	Primary B cells from peripheral blood	blood
12	chr5:118774000-118774200	Enhancers	Primary T cells from cord blood	blood
13	chr5:118774000-118774600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr5:118774000-118775200	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr5:118774000-118775600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:118774000-118775600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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