Variant report

Variant	rs2581472
Chromosome Location	chr15:100181875-100181876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:100105274..100108047-chr15:100179232..100182142,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000068305	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1019974	0.88[EUR][1000 genomes]
rs11247119	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12592092	0.83[EUR][1000 genomes]
rs12593785	0.83[EUR][1000 genomes]
rs12595285	0.80[EUR][1000 genomes]
rs12901291	0.80[EUR][1000 genomes]
rs12916000	0.83[EUR][1000 genomes]
rs167805	0.80[EUR][1000 genomes]
rs188977	0.81[EUR][1000 genomes]
rs191256	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2033546	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2117309	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2570807	0.84[EUR][1000 genomes]
rs2581467	0.83[EUR][1000 genomes]
rs2581470	0.88[EUR][1000 genomes]
rs2862869	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2862870	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs325390	0.84[EUR][1000 genomes]
rs325392	0.84[EUR][1000 genomes]
rs325394	0.83[EUR][1000 genomes]
rs325409	0.82[EUR][1000 genomes]
rs325410	0.82[EUR][1000 genomes]
rs34779575	0.89[EUR][1000 genomes]
rs35410986	0.81[EUR][1000 genomes]
rs35441914	0.83[EUR][1000 genomes]
rs3730281	0.80[EUR][1000 genomes]
rs4965532	0.86[EUR][1000 genomes]
rs7496677	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1038005	chr15:100170414-100633714	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv542522	chr15:100170414-100633714	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv904559	chr15:100174907-100255046	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100155200-100191000	Weak transcription	HSMMtube	muscle
2	chr15:100159000-100253000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:100159600-100200400	Weak transcription	Aorta	Aorta
4	chr15:100160800-100215200	Weak transcription	Ovary	ovary
5	chr15:100166800-100186200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr15:100167400-100185600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:100167600-100191600	Weak transcription	Pancreas	Pancrea
8	chr15:100168200-100214600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr15:100169400-100185800	Weak transcription	A549	lung
10	chr15:100170400-100185800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr15:100171200-100185400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:100171200-100191000	Weak transcription	Osteobl	bone
13	chr15:100171200-100191800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr15:100171200-100192200	Weak transcription	Placenta	Placenta
15	chr15:100171200-100232800	Weak transcription	Esophagus	oesophagus
16	chr15:100171200-100248800	Weak transcription	Gastric	stomach
17	chr15:100171800-100187000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr15:100171800-100190200	Weak transcription	Brain Hippocampus Middle	brain
19	chr15:100171800-100190400	Weak transcription	HMEC	breast
20	chr15:100172000-100230800	Weak transcription	Stomach Mucosa	stomach
21	chr15:100172400-100191400	Weak transcription	HUVEC	blood vessel
22	chr15:100172600-100185000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr15:100172600-100191200	Weak transcription	NH-A	brain
24	chr15:100172800-100183800	Weak transcription	Psoas Muscle	Psoas
25	chr15:100172800-100185800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr15:100172800-100197800	Weak transcription	Small Intestine	intestine
27	chr15:100173000-100185800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr15:100173000-100186000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr15:100173000-100186200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:100173200-100183800	Weak transcription	NHEK	skin
31	chr15:100173200-100189200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr15:100173200-100190200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr15:100173400-100187600	Weak transcription	Colon Smooth Muscle	Colon
34	chr15:100175000-100182000	Weak transcription	Brain Anterior Caudate	brain
35	chr15:100175000-100192400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr15:100175000-100199400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr15:100175000-100208800	Weak transcription	Brain Substantia Nigra	brain
38	chr15:100175000-100208800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr15:100175000-100211600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr15:100175400-100185000	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr15:100175600-100185000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr15:100175600-100185000	Weak transcription	Adipose Nuclei	Adipose
43	chr15:100175600-100185000	Weak transcription	HepG2	liver
44	chr15:100176600-100182000	Weak transcription	NHDF-Ad	bronchial
45	chr15:100176800-100184800	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr15:100176800-100185600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr15:100176800-100186400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr15:100176800-100190000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr15:100176800-100208800	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr15:100176800-100215200	Weak transcription	Brain Germinal Matrix	brain

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