Variant report

Variant	rs2581595
Chromosome Location	chr8:2146990-2146991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2581592	0.87[EUR][1000 genomes]
rs2618842	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2618843	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs317221	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs317224	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2139800-2147800	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr8:2141200-2147800	Enhancers	Primary T cells fromperipheralblood	blood
3	chr8:2141800-2147000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr8:2142000-2147000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:2143000-2148400	Enhancers	Fetal Thymus	thymus
6	chr8:2144000-2150600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr8:2145600-2147200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr8:2145800-2147000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:2145800-2147000	Enhancers	Thymus	Thymus
10	chr8:2145800-2153400	Enhancers	Primary T cells from cord blood	blood
11	chr8:2146000-2147000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr8:2146200-2152800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr8:2146600-2149400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr8:2146600-2149400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr8:2146600-2150200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr8:2146800-2147000	Enhancers	Fetal Brain Male	brain
17	chr8:2146800-2147000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr8:2146800-2148800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr8:2146800-2148800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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