Variant report

Variant	rs2582928
Chromosome Location	chr6:147483969-147483970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147482480..147485033-chr6:147490242..147491745,2	MCF-7	breast:
2	chr6:147477631..147490692-chr6:147521132..147530003,24	K562	blood:
3	chr6:147475725..147486468-chr6:147521132..147528058,22	K562	blood:
4	chr6:147219792..147222119-chr6:147481402..147483994,2	K562	blood:
5	chr6:147483460..147485748-chr6:147538509..147541125,2	K562	blood:
6	chr6:147211953..147214210-chr6:147481502..147484872,3	K562	blood:
7	chr6:147206177..147208553-chr6:147483473..147485065,2	K562	blood:
8	chr6:147232830..147236608-chr6:147480889..147484110,6	K562	blood:
9	chr6:147467323..147469647-chr6:147482917..147485817,3	K562	blood:
10	chr6:147212648..147214210-chr6:147483163..147484872,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1031013	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs1221645	0.96[CEU][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes]
rs2786181	0.87[EUR][1000 genomes]
rs2818867	0.93[ASW][hapmap];0.81[CEU][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs631474	0.93[ASW][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap]
rs649544	0.93[ASW][hapmap];0.96[CEU][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs694625	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147478400-147487600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:147478400-147487600	Weak transcription	HMEC	breast
3	chr6:147478400-147487600	Weak transcription	NHLF	lung
4	chr6:147480200-147486000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:147482000-147484200	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr6:147482800-147484200	Enhancers	HUVEC	blood vessel
7	chr6:147483000-147491000	Weak transcription	NH-A	brain
8	chr6:147483400-147485400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:147483400-147486200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:147483400-147487600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:147483800-147484000	Weak transcription	K562	blood
12	chr6:147483800-147487200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:147483800-147487600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:147483800-147487600	Weak transcription	Osteobl	bone
15	chr6:147483800-147487800	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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